| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is cdsA [H]
Identifier: 99081252
GI number: 99081252
Start: 1504970
End: 1505767
Strand: Reverse
Name: cdsA [H]
Synonym: TM1040_1411
Alternate gene names: 99081252
Gene position: 1505767-1504970 (Counterclockwise)
Preceding gene: 99081253
Following gene: 99081251
Centisome position: 47.04
GC content: 60.15
Gene sequence:
>798_bases ATGAAAACACCTCTTAGCGCGCATGCCTCCAAGGCGAACCGTTGGGCCGATCTCGGACCGCGCACTGCCTCTGCGGTTGT GCTGGCCCTGTTGGGCGGCGCTGCGATTTATCTCGGCAACCTTGCGTTTGCCCTGTTTGTGTCCCTGAGCGTGGGCGCGG TTTTCTGGGAAGTCACCCGGATGTATCGTACCGATGGGAGCCTCCTTGCGCTTGGCTTTGGCGCGCTGGCTGCAGCTGCG GTGTGCGTTGCGTCAATCGTGCCGCTGTTTCTCGCGCTCTTGGTTCTCGCGGTGCCGATGGTGGTAGGAACCCGCATCCT CGAAGAGCGCAACCTCTCGTTTCTGGCGATCCTGGTCTGGGTGCTTCTTGGCGGTTTTGGACTGATTTGGATGCGTGAGG GCATGGGAGTCACCTGGACCATCTGGCTGATTTCCGTCGTCGTTGCGACGGATGTGGCAGGGTACTTTGCTGGAAAGACG TTCGGCGGACCGAAACTCTGGCCTGCCGTCAGCCCAAAGAAGACCTGGTCCGGCACCTCTGGCGGCTGGGGCGCTGCAGC AGGCGTGGGGCTGGTCTTTGCGCTCTTTGTCGGTCTTCCCTGGAGCCTCGTTTGGATCTCGGTTTTTGTGTCGATGGCAA GCCAGGCTGGTGACATCGTGGAAAGCGCGGTCAAACGCTACCGCAATGTCAAGGATTCAAGCCAGATCATCCCGGGCCAC GGCGGTGTTTTTGACCGTTTTGATGGCATGCTGGGCGCTGGGGCACTCTGTTTCTTGATCGCCATCATCTGGGGATGA
Upstream 100 bases:
>100_bases AGTTCATCGACACGCTGTGGCCCGATTTTTCATCCGAAGAACTGGCGCGCCTGTGTCGTAACTTCGGCAATCGAGACAGA CGGTTCGGGGCCACCAAGAA
Downstream 100 bases:
>100_bases ACCTGCCCCAACGCGGGGCGCGGGGCGGGTGATGCATGGGGTCACTATGAAAAAGATATCGATTTTTGGGGCAACGGGAT CAATCGGGCAGAGCACCATT
Product: phosphatidate cytidylyltransferase
Products: NA
Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MKTPLSAHASKANRWADLGPRTASAVVLALLGGAAIYLGNLAFALFVSLSVGAVFWEVTRMYRTDGSLLALGFGALAAAA VCVASIVPLFLALLVLAVPMVVGTRILEERNLSFLAILVWVLLGGFGLIWMREGMGVTWTIWLISVVVATDVAGYFAGKT FGGPKLWPAVSPKKTWSGTSGGWGAAAGVGLVFALFVGLPWSLVWISVFVSMASQAGDIVESAVKRYRNVKDSSQIIPGH GGVFDRFDGMLGAGALCFLIAIIWG
Sequences:
>Translated_265_residues MKTPLSAHASKANRWADLGPRTASAVVLALLGGAAIYLGNLAFALFVSLSVGAVFWEVTRMYRTDGSLLALGFGALAAAA VCVASIVPLFLALLVLAVPMVVGTRILEERNLSFLAILVWVLLGGFGLIWMREGMGVTWTIWLISVVVATDVAGYFAGKT FGGPKLWPAVSPKKTWSGTSGGWGAAAGVGLVFALFVGLPWSLVWISVFVSMASQAGDIVESAVKRYRNVKDSSQIIPGH GGVFDRFDGMLGAGALCFLIAIIWG >Mature_265_residues MKTPLSAHASKANRWADLGPRTASAVVLALLGGAAIYLGNLAFALFVSLSVGAVFWEVTRMYRTDGSLLALGFGALAAAA VCVASIVPLFLALLVLAVPMVVGTRILEERNLSFLAILVWVLLGGFGLIWMREGMGVTWTIWLISVVVATDVAGYFAGKT FGGPKLWPAVSPKKTWSGTSGGWGAAAGVGLVFALFVGLPWSLVWISVFVSMASQAGDIVESAVKRYRNVKDSSQIIPGH GGVFDRFDGMLGAGALCFLIAIIWG
Specific function: Phospholipid biosynthesis. [C]
COG id: COG0575
COG function: function code I; CDP-diglyceride synthetase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI87081696, Length=121, Percent_Identity=39.6694214876033, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787677, Length=105, Percent_Identity=35.2380952380952, Blast_Score=64, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: =2.7.7.41 [H]
Molecular weight: Translated: 27850; Mature: 27850
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: PS01315 CDS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTPLSAHASKANRWADLGPRTASAVVLALLGGAAIYLGNLAFALFVSLSVGAVFWEVTR CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MYRTDGSLLALGFGALAAAAVCVASIVPLFLALLVLAVPMVVGTRILEERNLSFLAILVW HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VLLGGFGLIWMREGMGVTWTIWLISVVVATDVAGYFAGKTFGGPKLWPAVSPKKTWSGTS HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC GGWGAAAGVGLVFALFVGLPWSLVWISVFVSMASQAGDIVESAVKRYRNVKDSSQIIPGH CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC GGVFDRFDGMLGAGALCFLIAIIWG CCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKTPLSAHASKANRWADLGPRTASAVVLALLGGAAIYLGNLAFALFVSLSVGAVFWEVTR CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MYRTDGSLLALGFGALAAAAVCVASIVPLFLALLVLAVPMVVGTRILEERNLSFLAILVW HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VLLGGFGLIWMREGMGVTWTIWLISVVVATDVAGYFAGKTFGGPKLWPAVSPKKTWSGTS HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC GGWGAAAGVGLVFALFVGLPWSLVWISVFVSMASQAGDIVESAVKRYRNVKDSSQIIPGH CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC GGVFDRFDGMLGAGALCFLIAIIWG CCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]