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The map label for this gene is dapL [H]

Identifier: 99081211

GI number: 99081211

Start: 1462602

End: 1463744

Strand: Reverse

Name: dapL [H]

Synonym: TM1040_1370

Alternate gene names: 99081211

Gene position: 1463744-1462602 (Counterclockwise)

Preceding gene: 99081212

Following gene: 99081208

Centisome position: 45.73

GC content: 59.93

Gene sequence:

>1143_bases
ATGACGCCTGACGAACTGGATCGGTTGATCGCACTGCGCCATGCACTTCATTCAGCGCCGGAACTCTCTGGCGCTGAACA
GGAAACGGCTGCCCGCATCCTGTCCGAGTTGCAGCGCCTCAACCCTGATCAGATCCTAACAGACATTGGCGGCCATGGGA
TCGCTGCCATCTTTGACGGCGTCGCGCCCGGCGCAACTGTTGCAATCCGCTGTGAGCTGGACGCGCTGCCGATCCAGGAA
GAAAGCAGCCTCAGTTACATCTCTCAAGCCCCTGGCAAAGCACATCTTTGTGGGCATGACGGGCATATGGTCATGGTTCT
GGCCGTGGCCGAGGAGATGACGCGTCAGCGGCCAGCCTCAGGGCGTGTTGTGTTGATCTTTCAACCAGCAGAAGAGACCG
GTCAGGGGGCGAAAGCCTATCGGGAAGATACAAAGTTCCCCGAGATCCGACCCGACATGGTTCTGTCGCTGCACAATCTG
CCGGGGCTGGAGCTTGGGCATGTCTCTTTGCCGGTGGGACCTGCCAATTGCGCCTCGCGCGGCGCGCGGATCCGGTTGAC
GGGCCGGACCTCCCATGCCGCTGCGCCACAAGATGGGCGCTCTCCTGCGCTGGCGATTGCGCAGCTGATGCAGAAGCTTG
CAGCGCTGGCGACGGGCAGCGCGTTGGATGAAGACTACGCCCTAACCACCGTAACACACGCCACTTTGGGCGAGCCCACT
TTTGGGATCGCACCCGGGGTGGGTGAGGTTTGGGTGACTCTTCGGACCGCGACGGATCGCAAGATGCAAGAGCTCATCGA
AGCTGTGCAGATCATGGTCGAGAGCGCCACCGCGGATCTTGGGCTTGGTCATGTGATCACCTATCACGATGTTTTTGACG
CCTGTACAAACGCTCCTGATGCGGTTCAGGTGATCGAAGCCGCTTGCCACGCAGGCGCGGTTCCAATCACCCTGACCGAG
AGCCCGCAGGCGTTTTCCGAAGACTTCGGCCAGTTTGGGAAATCTGCCCGGACCGCGATGTTCTGGTTGGGGGCAGGAGA
GAGCCATCCCCAATTGCACAATCCCGATTATGATTTTCCGGATGCTCTCATCCCAATCGGGTCCGGAATTTTTATTCGCG
CGATCCGTCAGCTGTTGGGGTAG

Upstream 100 bases:

>100_bases
TTCTGATGGTGTCGGCAACACCGCTGACCCGGTCGTCCTATCACGCGGGCGATGATTTCGCCAAGCTGCGCGCGGCGCGG
AATGCCAAGCTTGGGCTTGC

Downstream 100 bases:

>100_bases
GCTCAGCGCTCTGCCAGAATGCGGTCGTGTGATCAGTCGATCAGGGCATCGACAACGGCGACCGCGCCCACGATGGCGAG
CGTGTCTTTGACCACCTCAA

Product: peptidase M20D, amidohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MTPDELDRLIALRHALHSAPELSGAEQETAARILSELQRLNPDQILTDIGGHGIAAIFDGVAPGATVAIRCELDALPIQE
ESSLSYISQAPGKAHLCGHDGHMVMVLAVAEEMTRQRPASGRVVLIFQPAEETGQGAKAYREDTKFPEIRPDMVLSLHNL
PGLELGHVSLPVGPANCASRGARIRLTGRTSHAAAPQDGRSPALAIAQLMQKLAALATGSALDEDYALTTVTHATLGEPT
FGIAPGVGEVWVTLRTATDRKMQELIEAVQIMVESATADLGLGHVITYHDVFDACTNAPDAVQVIEAACHAGAVPITLTE
SPQAFSEDFGQFGKSARTAMFWLGAGESHPQLHNPDYDFPDALIPIGSGIFIRAIRQLLG

Sequences:

>Translated_380_residues
MTPDELDRLIALRHALHSAPELSGAEQETAARILSELQRLNPDQILTDIGGHGIAAIFDGVAPGATVAIRCELDALPIQE
ESSLSYISQAPGKAHLCGHDGHMVMVLAVAEEMTRQRPASGRVVLIFQPAEETGQGAKAYREDTKFPEIRPDMVLSLHNL
PGLELGHVSLPVGPANCASRGARIRLTGRTSHAAAPQDGRSPALAIAQLMQKLAALATGSALDEDYALTTVTHATLGEPT
FGIAPGVGEVWVTLRTATDRKMQELIEAVQIMVESATADLGLGHVITYHDVFDACTNAPDAVQVIEAACHAGAVPITLTE
SPQAFSEDFGQFGKSARTAMFWLGAGESHPQLHNPDYDFPDALIPIGSGIFIRAIRQLLG
>Mature_379_residues
TPDELDRLIALRHALHSAPELSGAEQETAARILSELQRLNPDQILTDIGGHGIAAIFDGVAPGATVAIRCELDALPIQEE
SSLSYISQAPGKAHLCGHDGHMVMVLAVAEEMTRQRPASGRVVLIFQPAEETGQGAKAYREDTKFPEIRPDMVLSLHNLP
GLELGHVSLPVGPANCASRGARIRLTGRTSHAAAPQDGRSPALAIAQLMQKLAALATGSALDEDYALTTVTHATLGEPTF
GIAPGVGEVWVTLRTATDRKMQELIEAVQIMVESATADLGLGHVITYHDVFDACTNAPDAVQVIEAACHAGAVPITLTES
PQAFSEDFGQFGKSARTAMFWLGAGESHPQLHNPDYDFPDALIPIGSGIFIRAIRQLLG

Specific function: Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate [H]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family. DapL subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081880, Length=95, Percent_Identity=38.9473684210526, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.47 [H]

Molecular weight: Translated: 40353; Mature: 40222

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDELDRLIALRHALHSAPELSGAEQETAARILSELQRLNPDQILTDIGGHGIAAIFDG
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHCC
VAPGATVAIRCELDALPIQEESSLSYISQAPGKAHLCGHDGHMVMVLAVAEEMTRQRPAS
CCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCEEEEHHHHHHHHHCCCCC
GRVVLIFQPAEETGQGAKAYREDTKFPEIRPDMVLSLHNLPGLELGHVSLPVGPANCASR
CCEEEEECCCHHCCCCHHHHHHCCCCCCCCHHHHEEECCCCCCEECCEECCCCCHHHHCC
GARIRLTGRTSHAAAPQDGRSPALAIAQLMQKLAALATGSALDEDYALTTVTHATLGEPT
CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHCCCCC
FGIAPGVGEVWVTLRTATDRKMQELIEAVQIMVESATADLGLGHVITYHDVFDACTNAPD
CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCH
AVQVIEAACHAGAVPITLTESPQAFSEDFGQFGKSARTAMFWLGAGESHPQLHNPDYDFP
HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCC
DALIPIGSGIFIRAIRQLLG
CHHHHCCCCHHHHHHHHHHC
>Mature Secondary Structure 
TPDELDRLIALRHALHSAPELSGAEQETAARILSELQRLNPDQILTDIGGHGIAAIFDG
CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHCC
VAPGATVAIRCELDALPIQEESSLSYISQAPGKAHLCGHDGHMVMVLAVAEEMTRQRPAS
CCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCEEEEHHHHHHHHHCCCCC
GRVVLIFQPAEETGQGAKAYREDTKFPEIRPDMVLSLHNLPGLELGHVSLPVGPANCASR
CCEEEEECCCHHCCCCHHHHHHCCCCCCCCHHHHEEECCCCCCEECCEECCCCCHHHHCC
GARIRLTGRTSHAAAPQDGRSPALAIAQLMQKLAALATGSALDEDYALTTVTHATLGEPT
CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHCCCCC
FGIAPGVGEVWVTLRTATDRKMQELIEAVQIMVESATADLGLGHVITYHDVFDACTNAPD
CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCH
AVQVIEAACHAGAVPITLTESPQAFSEDFGQFGKSARTAMFWLGAGESHPQLHNPDYDFP
HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCC
DALIPIGSGIFIRAIRQLLG
CHHHHCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA