The gene/protein map for NC_008044 is currently unavailable.
Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is yejA [C]

Identifier: 99081184

GI number: 99081184

Start: 1430594

End: 1432423

Strand: Direct

Name: yejA [C]

Synonym: TM1040_1343

Alternate gene names: 99081184

Gene position: 1430594-1432423 (Clockwise)

Preceding gene: 99081181

Following gene: 99081185

Centisome position: 44.69

GC content: 58.8

Gene sequence:

>1830_bases
ATGAGACCATTATTTTTCTCTTCTATCCGCTCAGCCGTGGCTGGAATCACGTTTCTCACCGGGGCGTCCTTTGCGGCCGC
AGAATCAGCCCATGGCATCGCCATGTATGGCGATCCCCAGCTTTCGCCGGGGTTTGAATCTCTGCCCTATGTGAACCCCG
AAGCCCCAAAAGGCGGCGCGGTTGTATTTGGCAATCTGGGCGGTTTTGACTCCCTCAATCCATTTACCCAGAAAGGCAAC
CCGCCCTGGCAAATGCGGTTCTGGGGTTACGAGAGTTTGATGGGGCGCTCCTATGACGAGCCGTTTTCGCTCTATGGGTT
GCTGGCCGAATCGATTGAAACGCCAGAGGACAGATCCTGGGTCGAATTCACGCTGCGCGAAGAGGCCAGGTTTTCGGACG
GCACCCCGGTCACGATCGAGGATGTCATCTGGTCCTACGAGACCCTCGGCACCGAGGGAAACCTGCGCTATCGCGGTTTC
TGGGCCAAGGTTGACAGCATTGAGCAGACCGGCCCGCGGAGCCTGCGGCTGACGTTCAATGTCGAGGATCGCGAGCTCGC
GTTGATCGCTGGGCTGCGACCCATCCTCAAGAAGTCACAGTGGGATGGGCGTGACTTTGCAGATGCTCCGCCGAATGAGG
CCCCCATCGGCACGGCGCCCTATGTGGTGAGCGACTTTGAACTTGGTCGCTCTGTGACTTTCACCCGCAACGCTGACTAT
TGGGGCAAGGATCTGCCACTGCGCCGGGGCACCAATAATTTCGACGAAATGCGACTCGAGTTCTTTGGCGACCAAACGGT
CCTCTTTGAAGCCTTCAAGGCAGGGGAACTCTCGGCGGTGCGTGAATTCAACGCTGCGAAGTGGGATAGCGATTACGGTT
TTGCACGCGTGCAAAATGGGGATGTCATCAAGACGGAAATTCCCAATCAGAAACCCTCGGGCATGACGGGGCTTGTGATG
AATACAAGGCGCGCACCATTGGATGACTGGCGGGTGCGGCAGGCTCTTATCGAGGCGTTCAACTACGAGTTCATCAATGA
CACGCTGACCGGCGGGCGACTGCCGCGCATCACCTCTTATTTCTCGAACTCTTACCTGTCGATGCAGCCGGGAGAGGCAA
CAGGTCGTGTGGCAGAGCTGCTGGAGCCCTTTAAGGATGCGCTTCTTCCCGGCACGCTCGAAGGCTATGCGCTTCCGGTT
TCTGATGGCAGCGAGCGCAACCGCGCCAATCTGCGCCGTGCCCGCGCCCTGTTGCAGGATGCCGGCTGGACCGTCGGAGA
CGACGGGATACTGCGCGACGCGAAGGGCGCCACGATGGCGCTCAAGGTTCTGCTCCAGAATGGCAACCTCGGCGAAGCTG
AGATGCAAAAAGCCGTCGACATCTATGCCACCGCACTGGAACGTCTGGGGATCAGCCTGACCACAGACCTCGTTGACAGC
GCACAATATGTCGAGCGCCAGGACGCCTATGAATTTGATCTGACCTTCTTTCGCCGCGCGCTTTCGCTCAGCCCCGGCAA
CGAACAGATGCTCTATTGGGGCAGCGCAGGGGCGGACACGCCCGGCTCTCGTAACCTGATGGGCATGAAAAGCCCCGCTG
CCGAGGCGATGATCCAGCATATGCTGACGACCAAATCCTCGGAAGAGTTCATTGCCGCAGCCCGTGCTCTGGACCGGGTA
TTGACCGCAGGACGCTATGTGATTCCCATCTGGCAGTACGCAAAAAGCCGCATCGCGCATGAGGCAAGCCTGCGCTACCC
GATGCGCATCCCGATCTATGGCGACGGGATCTATTACATGCCCGAGGTCTGGTGGAACGCCTCCGAATAA

Upstream 100 bases:

>100_bases
AATTTCTGGCCTCGGTCCAAGCTAAAAGTTTGAACTCTTCCCGTAGCCCAGATAGCGTCATGACTTATGAAAATAAGGGC
AGCGCAGGATTGTTCTCAAA

Downstream 100 bases:

>100_bases
ACCTCTAACCGGCCCTCTGGGCCGGTTTTTTTTCGCATCTGGCGAGGGGATTGAGTGGAAAATCATGCGCTGTTTTCTCA
CTGAAACGGCGCCTTTGAGC

Product: extracellular solute-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 609; Mature: 609

Protein sequence:

>609_residues
MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGAVVFGNLGGFDSLNPFTQKGN
PPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSWVEFTLREEARFSDGTPVTIEDVIWSYETLGTEGNLRYRGF
WAKVDSIEQTGPRSLRLTFNVEDRELALIAGLRPILKKSQWDGRDFADAPPNEAPIGTAPYVVSDFELGRSVTFTRNADY
WGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAVREFNAAKWDSDYGFARVQNGDVIKTEIPNQKPSGMTGLVM
NTRRAPLDDWRVRQALIEAFNYEFINDTLTGGRLPRITSYFSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPV
SDGSERNRANLRRARALLQDAGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDS
AQYVERQDAYEFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQHMLTTKSSEEFIAAARALDRV
LTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYMPEVWWNASE

Sequences:

>Translated_609_residues
MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGAVVFGNLGGFDSLNPFTQKGN
PPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSWVEFTLREEARFSDGTPVTIEDVIWSYETLGTEGNLRYRGF
WAKVDSIEQTGPRSLRLTFNVEDRELALIAGLRPILKKSQWDGRDFADAPPNEAPIGTAPYVVSDFELGRSVTFTRNADY
WGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAVREFNAAKWDSDYGFARVQNGDVIKTEIPNQKPSGMTGLVM
NTRRAPLDDWRVRQALIEAFNYEFINDTLTGGRLPRITSYFSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPV
SDGSERNRANLRRARALLQDAGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDS
AQYVERQDAYEFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQHMLTTKSSEEFIAAARALDRV
LTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYMPEVWWNASE
>Mature_609_residues
MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGAVVFGNLGGFDSLNPFTQKGN
PPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSWVEFTLREEARFSDGTPVTIEDVIWSYETLGTEGNLRYRGF
WAKVDSIEQTGPRSLRLTFNVEDRELALIAGLRPILKKSQWDGRDFADAPPNEAPIGTAPYVVSDFELGRSVTFTRNADY
WGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAVREFNAAKWDSDYGFARVQNGDVIKTEIPNQKPSGMTGLVM
NTRRAPLDDWRVRQALIEAFNYEFINDTLTGGRLPRITSYFSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPV
SDGSERNRANLRRARALLQDAGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDS
AQYVERQDAYEFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQHMLTTKSSEEFIAAARALDRV
LTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYMPEVWWNASE

Specific function: Unknown

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87082063, Length=592, Percent_Identity=31.0810810810811, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI1789887, Length=421, Percent_Identity=23.5154394299287, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 67920; Mature: 67920

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGA
CCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCE
VVFGNLGGFDSLNPFTQKGNPPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSW
EEEECCCCCCCCCCHHCCCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
VEFTLREEARFSDGTPVTIEDVIWSYETLGTEGNLRYRGFWAKVDSIEQTGPRSLRLTFN
EEEEEHHHCCCCCCCCEEHHHHHHHHHHCCCCCCEEEEEEEEECCCHHCCCCCEEEEEEE
VEDRELALIAGLRPILKKSQWDGRDFADAPPNEAPIGTAPYVVSDFELGRSVTFTRNADY
CCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHCCCEEEEEECCCC
WGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAVREFNAAKWDSDYGFARVQNG
CCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHCCCCHHHHHHCCCCCCCCCCCEEEECCC
DVIKTEIPNQKPSGMTGLVMNTRRAPLDDWRVRQALIEAFNYEFINDTLTGGRLPRITSY
CEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHH
FSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPVSDGSERNRANLRRARALLQD
HCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
AGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDS
CCCEECCCCCEECCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AQYVERQDAYEFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQH
HHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
MLTTKSSEEFIAAARALDRVLTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYM
HHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCEEEC
PEVWWNASE
CCCCCCCCC
>Mature Secondary Structure
MRPLFFSSIRSAVAGITFLTGASFAAAESAHGIAMYGDPQLSPGFESLPYVNPEAPKGGA
CCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCE
VVFGNLGGFDSLNPFTQKGNPPWQMRFWGYESLMGRSYDEPFSLYGLLAESIETPEDRSW
EEEECCCCCCCCCCHHCCCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
VEFTLREEARFSDGTPVTIEDVIWSYETLGTEGNLRYRGFWAKVDSIEQTGPRSLRLTFN
EEEEEHHHCCCCCCCCEEHHHHHHHHHHCCCCCCEEEEEEEEECCCHHCCCCCEEEEEEE
VEDRELALIAGLRPILKKSQWDGRDFADAPPNEAPIGTAPYVVSDFELGRSVTFTRNADY
CCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHCCCEEEEEECCCC
WGKDLPLRRGTNNFDEMRLEFFGDQTVLFEAFKAGELSAVREFNAAKWDSDYGFARVQNG
CCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHCCCCHHHHHHCCCCCCCCCCCEEEECCC
DVIKTEIPNQKPSGMTGLVMNTRRAPLDDWRVRQALIEAFNYEFINDTLTGGRLPRITSY
CEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHH
FSNSYLSMQPGEATGRVAELLEPFKDALLPGTLEGYALPVSDGSERNRANLRRARALLQD
HCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
AGWTVGDDGILRDAKGATMALKVLLQNGNLGEAEMQKAVDIYATALERLGISLTTDLVDS
CCCEECCCCCEECCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AQYVERQDAYEFDLTFFRRALSLSPGNEQMLYWGSAGADTPGSRNLMGMKSPAAEAMIQH
HHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
MLTTKSSEEFIAAARALDRVLTAGRYVIPIWQYAKSRIAHEASLRYPMRIPIYGDGIYYM
HHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCEEEC
PEVWWNASE
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA