| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081150
Identifier: 99081150
GI number: 99081150
Start: 1399675
End: 1400223
Strand: Reverse
Name: 99081150
Synonym: TM1040_1309
Alternate gene names: NA
Gene position: 1400223-1399675 (Counterclockwise)
Preceding gene: 99081151
Following gene: 99081147
Centisome position: 43.74
GC content: 50.27
Gene sequence:
>549_bases ATGTCGCGTATTAAAAACTTCGGCTCTTTTTTGGGTGGTGTCGGAACAGCTGTAGCAGCAAGTATTGGAGCGTATTCTCT TTTCTATCCGGGTAAGCTTGCAATCGAATCCCCACCCGACTTGATCGAAAGTGTTGGAAGTCTTTCATCCGCACTTGACG GACTGAGCCTAGCGTTGACGGAAGATGAAAGCGAGGCACTCAAGCAACGGCTTCAGTCACTGGAAACGCAAATCGCACGA ACGATTACAACAGGTGACAACGATCAGCTTCCCTTTGTGCCACGTAGCTTCCAAGGGCTTAGAACCTTTGAGCAAAACGT AGCTTACGACTTTATCGCTCCTAATGGTGTCAGCCGCCTTCTAGTTTTCGAGGATACGAACTCCGGGAGTGCGATGTTCG TACAGGTCGATGGCGCGCCCGCTGAAGTCAATGCTTGGCCGACAATCGGCCAACATATCGATATCGAGTTTGGCAACGAG AGCTGTCGCTTCGAGTTCATTGACCTAGAACGTGGGAGCAGCATCACATCGCGAGTAAACTGCAGTTGA
Upstream 100 bases:
>100_bases ACTGTGGTGGACGTGCGAGCCTGCGTGAGTTGGTTTTTGCGTACATCAAAGATTGAAAAACTTGATAAGTCGGCCTTTTC GTATTTTCTAGGAGCTCCGT
Downstream 100 bases:
>100_bases AGGCGGTAGTGCCTGTACTCTTTTATGATTTCTCTAACTGAAACCAGATTTGTATCCCAGACTTTGGGGGCCGTTTAGTC CCTACTCAACAGGTATCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MSRIKNFGSFLGGVGTAVAASIGAYSLFYPGKLAIESPPDLIESVGSLSSALDGLSLALTEDESEALKQRLQSLETQIAR TITTGDNDQLPFVPRSFQGLRTFEQNVAYDFIAPNGVSRLLVFEDTNSGSAMFVQVDGAPAEVNAWPTIGQHIDIEFGNE SCRFEFIDLERGSSITSRVNCS
Sequences:
>Translated_182_residues MSRIKNFGSFLGGVGTAVAASIGAYSLFYPGKLAIESPPDLIESVGSLSSALDGLSLALTEDESEALKQRLQSLETQIAR TITTGDNDQLPFVPRSFQGLRTFEQNVAYDFIAPNGVSRLLVFEDTNSGSAMFVQVDGAPAEVNAWPTIGQHIDIEFGNE SCRFEFIDLERGSSITSRVNCS >Mature_181_residues SRIKNFGSFLGGVGTAVAASIGAYSLFYPGKLAIESPPDLIESVGSLSSALDGLSLALTEDESEALKQRLQSLETQIART ITTGDNDQLPFVPRSFQGLRTFEQNVAYDFIAPNGVSRLLVFEDTNSGSAMFVQVDGAPAEVNAWPTIGQHIDIEFGNES CRFEFIDLERGSSITSRVNCS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19591; Mature: 19460
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIKNFGSFLGGVGTAVAASIGAYSLFYPGKLAIESPPDLIESVGSLSSALDGLSLALT CCHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHHHHCCEEEEEE EDESEALKQRLQSLETQIARTITTGDNDQLPFVPRSFQGLRTFEQNVAYDFIAPNGVSRL CCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHCEEEEECCCCCEEE LVFEDTNSGSAMFVQVDGAPAEVNAWPTIGQHIDIEFGNESCRFEFIDLERGSSITSRVN EEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEC CS CC >Mature Secondary Structure SRIKNFGSFLGGVGTAVAASIGAYSLFYPGKLAIESPPDLIESVGSLSSALDGLSLALT CHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHHHHCCEEEEEE EDESEALKQRLQSLETQIARTITTGDNDQLPFVPRSFQGLRTFEQNVAYDFIAPNGVSRL CCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHCEEEEECCCCCEEE LVFEDTNSGSAMFVQVDGAPAEVNAWPTIGQHIDIEFGNESCRFEFIDLERGSSITSRVN EEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEC CS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA