| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081145
Identifier: 99081145
GI number: 99081145
Start: 1396955
End: 1397338
Strand: Reverse
Name: 99081145
Synonym: TM1040_1304
Alternate gene names: NA
Gene position: 1397338-1396955 (Counterclockwise)
Preceding gene: 99081146
Following gene: 99081144
Centisome position: 43.65
GC content: 66.67
Gene sequence:
>384_bases ATGCCGCTGCTGCCTCTCCTGCTGATCTGTGCGGCTTTGGCGTCCTGCGCGAAGGTTGCGGGTCTCGTCGGCGGGGCGCT GGGTGGCGGGCCCAGCGTGGCGGCGAACGTCCAGGCAGGCCGTAACAATGCCCAGACCGTCGGGCAGGCGACGTTCAGCG ATCAGAGGATCGAGGACGTGCAGGCGCGCAGCGTAGAACTGAGCGCAGGCGATACGCGGGTCAGGAGTGAGAACGTCGAG ACGGTGATCGTTCGCGAAGATCCGCCTGCATGGTTGCTTCTGGTGGCCCTTGTCGGCTGGCTGCTGCCAACACCGCAGCA GATGGGCGGAGCGCTGTTCGGCATTATCGCCAGGCCTTTTCGCGGGTCCTTCCCCGGGGGGTGA
Upstream 100 bases:
>100_bases AACTGCGCCGCTGGGTGATCGCGGGTGGCAAACGGGTGCGCGGGCTAGCCAATCGCCGGGCCGATAGCAAGCGAACGCTG TGCCTCAAGGGGCTGACCTG
Downstream 100 bases:
>100_bases CGTCTGTGGGTGTGCCTATGCGCCGAAATTTATGTGTGCGTGCCGCCGGGCGAAGGGGTTGTTTATTATATAGATCGCGC AACTCCCTGATGAATTTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MPLLPLLLICAALASCAKVAGLVGGALGGGPSVAANVQAGRNNAQTVGQATFSDQRIEDVQARSVELSAGDTRVRSENVE TVIVREDPPAWLLLVALVGWLLPTPQQMGGALFGIIARPFRGSFPGG
Sequences:
>Translated_127_residues MPLLPLLLICAALASCAKVAGLVGGALGGGPSVAANVQAGRNNAQTVGQATFSDQRIEDVQARSVELSAGDTRVRSENVE TVIVREDPPAWLLLVALVGWLLPTPQQMGGALFGIIARPFRGSFPGG >Mature_126_residues PLLPLLLICAALASCAKVAGLVGGALGGGPSVAANVQAGRNNAQTVGQATFSDQRIEDVQARSVELSAGDTRVRSENVET VIVREDPPAWLLLVALVGWLLPTPQQMGGALFGIIARPFRGSFPGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13060; Mature: 12929
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLPLLLICAALASCAKVAGLVGGALGGGPSVAANVQAGRNNAQTVGQATFSDQRIEDV CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHCCHHHHHHH QARSVELSAGDTRVRSENVETVIVREDPPAWLLLVALVGWLLPTPQQMGGALFGIIARPF HHHEEECCCCCCEECCCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC RGSFPGG CCCCCCC >Mature Secondary Structure PLLPLLLICAALASCAKVAGLVGGALGGGPSVAANVQAGRNNAQTVGQATFSDQRIEDV CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHCCHHHHHHH QARSVELSAGDTRVRSENVETVIVREDPPAWLLLVALVGWLLPTPQQMGGALFGIIARPF HHHEEECCCCCCEECCCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC RGSFPGG CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA