| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081140
Identifier: 99081140
GI number: 99081140
Start: 1390120
End: 1392111
Strand: Reverse
Name: 99081140
Synonym: TM1040_1299
Alternate gene names: NA
Gene position: 1392111-1390120 (Counterclockwise)
Preceding gene: 99081141
Following gene: 99081139
Centisome position: 43.49
GC content: 61.75
Gene sequence:
>1992_bases TTGACCCGCGAAGTCACAGCGGAGCAGATCAACGCGCGCGGCGAGGGCGGTGCGATGCGCCGCATGGGAGAGGTGCGCGA AATCAACGTCGAGGCGCGCACTGTCGAGCTTGCCTTCTCGAGCACGACCCCGGTGCGGCGCTGGTTTGGCGATGAGGTGC TTTCCCATGACGCCGAGGCCGTGGTTCTGGACCGTCTGCTCGACGGCGGGGCAGTATTGGTCGGGCACAATTGGGACGAT CAGGTCGGCGTTGTGCAAAGTGCGCGCGTCGATTCCGACGGCGTCGGGCGCGCTGTTGTGCGGTTCGGCAAGAGCGCCCG CGCGAGCGAGATCTTTCAGGACATCGTCGACGGCATTCGGCAGCACGTCTCGGTTGGCTACCGGGTGATCACGATCAGCG AGGAAATACGGGAAGGTCAGCCGAACCTTATCACGGTCACGCGCTGGGAGCCGTTCGAGATTTCGGTCGTACCGGTGCCA GCTGATCCGACAGTCGGCATCGGTCGCGCGCTGGAAAATCCGCCAGAGGCGGGCGGGGCGGATCGTGGCCAAACTGGCGA AGAGAATGCGGGCGCGGTGGCCGAGCCCAACGATACAGGACAAAGGGAAACACAGATGAAAACCATCATCACCCGCGACG CCGAGGGCAATCTTGTCCGGGCCAAGGTCGACGAAAACGATCAGATCATCGAAGTGATCGAGGTGCTCGAACGTGCAGGC GCAGCGGAAACTGCCATGCTGTCGCGTCTGCAGGAGCAGGAAGCGGCCCGCGTGCGCGAACTGACCGAGTTGGGTCGCGA ATACGACGCGCCGGAGCTCGCAACAGAAATGATTGCCGGGCGTCATGGCGTGACCGACATGCGCGAACGCCTGCTTGATC ACCTACACCAGCGCAGCAATGAAAGTCGCCAAATTTCTGAGCGTTCCAGCATTGGCCTGACCGACAGCGAAACAGAGCAG TTTTCGTTCCTGCGCGCGATCCGGGCGCTGGCAAATCCGACAGACCGCAGCGCCCAGGAAGCGGCTGCTTTCGAGTTCGA GGTCTCCGATGCTGCCGCCGAGGCGCAGGGGCGCGATGCGCAGGGCGTAATGGTGCCGATGGACGTGCTGATGCGTGCGC CGCTGAACACGGGTTCCGGTGGCGCGACCGCTGCCGATACCGGCGGCAACACCATCGCAAACCCGTTGCTGACGCAGAGC TTTATTCAGATGCTGCGCAACCGTACGATCCTTTTGCAGCTCGCGACTCCGCTGATGGGTCTGGTGGGCAACCCTGATAT CCCGACGCAGGAAGGTGGTGCGACCGGCTACTGGATCGGTGAGGATATCGAGGCGACAGAGGATCTGCTGTCTCTGGGTC AGCGCCAGTTTTCTCCGAAAACTGTTGCGGCCTATTCGGAGATCACGCGCCGCACTCTCAAGCAATCCAGTTTGGATATC GAGGCGCTGGTGCGTAGTGACCTTGCGCTCGCATTGGCAACCTCGCTGGATTTTGCGGGTTTCTATGGCACCGGCGCCAA CGATCAGCCGCTGGGTATCGCGAATACGAGCGGCGTGAATGTGGTCGACTTTGGCGGCGCAGCGTCTGGTGGCGGATCCG CCCTCCCGACCTGGGCCGAAGTGATCCAGATGGAGAGCGAGATTTCTGCTGCAAATGCCGATGTGAATAGCATGGCGTAT GTGCAGAACGCCAAGATGCGTGGTCACTTCAAGAGCACGCAGAAATTCAGCGGCACAAACGGTGCGCCCATCTGGGAGAG CGACAACACCGTGAACGGATATCGCGGCGAAGTTACCAACCAGATTAAAGATGGTGACGTGTTCCACGGTGATTTCGCGA ACGTCCTGGTTGGCATGTGGGGTGGTCTGGATATTACGGTGGACCCGTACACCCACAGCCGCCGCGGGCGCCTGCGCATC GTGACGATGCAGGACGCGGATTATGTTCTGCGTCACCCGGCGGGCCTCTGCTTCGGCACTGACGCCAGCTAA
Upstream 100 bases:
>100_bases GGGCAGGGCAGTGGACAGCCAGCCAAAACCGGCACCGGAGAAACCGACCCAGACGCCGACCCAGACCCCGACAAAAGCGA ATGACATTATCGGGCGGTCG
Downstream 100 bases:
>100_bases CCCGAGCACGCATTAAATCTCTGGCCTGATCAGGCCAGAGACACCCCCTGAAAAAGGATCGAAAACGTGGCTGATACCAA GAAACCGCAGAAAAAGATTT
Product: peptidase U35, phage prohead HK97
Products: NA
Alternate protein names: Peptidase U; Capsid Protein HK; Phage-Related Protein; Phage Capsid Protein; Phage Protease; Peptidase S
Number of amino acids: Translated: 663; Mature: 662
Protein sequence:
>663_residues MTREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEAVVLDRLLDGGAVLVGHNWDD QVGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIRQHVSVGYRVITISEEIREGQPNLITVTRWEPFEISVVPVP ADPTVGIGRALENPPEAGGADRGQTGEENAGAVAEPNDTGQRETQMKTIITRDAEGNLVRAKVDENDQIIEVIEVLERAG AAETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAGRHGVTDMRERLLDHLHQRSNESRQISERSSIGLTDSETEQ FSFLRAIRALANPTDRSAQEAAAFEFEVSDAAAEAQGRDAQGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQS FIQMLRNRTILLQLATPLMGLVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDI EALVRSDLALALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAEVIQMESEISAANADVNSMAY VQNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTNQIKDGDVFHGDFANVLVGMWGGLDITVDPYTHSRRGRLRI VTMQDADYVLRHPAGLCFGTDAS
Sequences:
>Translated_663_residues MTREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEAVVLDRLLDGGAVLVGHNWDD QVGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIRQHVSVGYRVITISEEIREGQPNLITVTRWEPFEISVVPVP ADPTVGIGRALENPPEAGGADRGQTGEENAGAVAEPNDTGQRETQMKTIITRDAEGNLVRAKVDENDQIIEVIEVLERAG AAETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAGRHGVTDMRERLLDHLHQRSNESRQISERSSIGLTDSETEQ FSFLRAIRALANPTDRSAQEAAAFEFEVSDAAAEAQGRDAQGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQS FIQMLRNRTILLQLATPLMGLVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDI EALVRSDLALALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAEVIQMESEISAANADVNSMAY VQNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTNQIKDGDVFHGDFANVLVGMWGGLDITVDPYTHSRRGRLRI VTMQDADYVLRHPAGLCFGTDAS >Mature_662_residues TREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEAVVLDRLLDGGAVLVGHNWDDQ VGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIRQHVSVGYRVITISEEIREGQPNLITVTRWEPFEISVVPVPA DPTVGIGRALENPPEAGGADRGQTGEENAGAVAEPNDTGQRETQMKTIITRDAEGNLVRAKVDENDQIIEVIEVLERAGA AETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAGRHGVTDMRERLLDHLHQRSNESRQISERSSIGLTDSETEQF SFLRAIRALANPTDRSAQEAAAFEFEVSDAAAEAQGRDAQGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQSF IQMLRNRTILLQLATPLMGLVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDIE ALVRSDLALALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAEVIQMESEISAANADVNSMAYV QNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTNQIKDGDVFHGDFANVLVGMWGGLDITVDPYTHSRRGRLRIV TMQDADYVLRHPAGLCFGTDAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71452; Mature: 71321
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: PS00191 CYTOCHROME_B5_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEA CCCCCCHHHHCCCCCCHHHHHHCCHHEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCHH VVLDRLLDGGAVLVGHNWDDQVGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIR HHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH QHVSVGYRVITISEEIREGQPNLITVTRWEPFEISVVPVPADPTVGIGRALENPPEAGGA HHHHCCEEEEEEEHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCCCHHHCCCCCCCCC DRGQTGEENAGAVAEPNDTGQRETQMKTIITRDAEGNLVRAKVDENDQIIEVIEVLERAG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCEEEEEECCCHHHHHHHHHHHHCC AAETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAGRHGVTDMRERLLDHLHQRSN CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC ESRQISERSSIGLTDSETEQFSFLRAIRALANPTDRSAQEAAAFEFEVSDAAAEAQGRDA CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEECHHHHHCCCCCC QGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQSFIQMLRNRTILLQLATPLMG CCEEEHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHH LVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDI HCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH EALVRSDLALALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAE HHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCHHHHH VIQMESEISAANADVNSMAYVQNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTN HHHHHHHHHHCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QIKDGDVFHGDFANVLVGMWGGLDITVDPYTHSRRGRLRIVTMQDADYVLRHPAGLCFGT CCCCCCEECCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHCCCCEEECC DAS CCC >Mature Secondary Structure TREVTAEQINARGEGGAMRRMGEVREINVEARTVELAFSSTTPVRRWFGDEVLSHDAEA CCCCCHHHHCCCCCCHHHHHHCCHHEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCHH VVLDRLLDGGAVLVGHNWDDQVGVVQSARVDSDGVGRAVVRFGKSARASEIFQDIVDGIR HHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH QHVSVGYRVITISEEIREGQPNLITVTRWEPFEISVVPVPADPTVGIGRALENPPEAGGA HHHHCCEEEEEEEHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCCCHHHCCCCCCCCC DRGQTGEENAGAVAEPNDTGQRETQMKTIITRDAEGNLVRAKVDENDQIIEVIEVLERAG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCEEEEEECCCHHHHHHHHHHHHCC AAETAMLSRLQEQEAARVRELTELGREYDAPELATEMIAGRHGVTDMRERLLDHLHQRSN CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC ESRQISERSSIGLTDSETEQFSFLRAIRALANPTDRSAQEAAAFEFEVSDAAAEAQGRDA CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEECHHHHHCCCCCC QGVMVPMDVLMRAPLNTGSGGATAADTGGNTIANPLLTQSFIQMLRNRTILLQLATPLMG CCEEEHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHH LVGNPDIPTQEGGATGYWIGEDIEATEDLLSLGQRQFSPKTVAAYSEITRRTLKQSSLDI HCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH EALVRSDLALALATSLDFAGFYGTGANDQPLGIANTSGVNVVDFGGAASGGGSALPTWAE HHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCHHHHH VIQMESEISAANADVNSMAYVQNAKMRGHFKSTQKFSGTNGAPIWESDNTVNGYRGEVTN HHHHHHHHHHCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QIKDGDVFHGDFANVLVGMWGGLDITVDPYTHSRRGRLRIVTMQDADYVLRHPAGLCFGT CCCCCCEECCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHCCCCEEECC DAS CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA