| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081125
Identifier: 99081125
GI number: 99081125
Start: 1381659
End: 1382876
Strand: Reverse
Name: 99081125
Synonym: TM1040_1284
Alternate gene names: NA
Gene position: 1382876-1381659 (Counterclockwise)
Preceding gene: 99081126
Following gene: 99081124
Centisome position: 43.2
GC content: 60.18
Gene sequence:
>1218_bases ATGGCTGGGTTTCTTCACGGCGTCGAGGTTCTCGAGATCGACACGGGTCCGCGCCCGATCCAAGCGATCCCGACCAGTGT GATCGGTATTGTTGGGACTGCGCCTGCGGCTGACGAAACTGCCTTTCCGCTGAATACACCGGTACTGGTCGCAGGCAGCC GCCTTGAGGCGGCAAAGCTCGACACCACCGACGACGGCACCGGCGGTGGAACGCTTCCTGCTGCGCTCGACGGGATCTTT GACCAGATCGGCGCGGTTGTGATCGTTGTGCGCGTTGACGAGGGCGTCGATGAAGCAGCAACGCTCGCCAATGTGATCGG CGGCGTGAATGCGACGGACGGGCAATTTGAGGGTGTGCATGCGCTGTCTGGTGCGGAGAGCGTCGTGGGGTTTGCACCGC GCATCCTTATCGCCCCAGGTTGGACGCATCAGCGCCCAGAGGACGCAGGAAATCCCGGCTCCTATCTTGCGAACCCGGTG GTCGCCGAGTTGGAAGGCATTGCTAACCGTATCGGCGCGGTGATCATCGCAGACGGGCCGAACACGACCGACGCAGATGC ACACACTTACGCTGGCGATTGGGGCACTTCAGGTCGCATCTATGTCGTTGACCCTTGGGTGAAGGTTCTCGACAGCGCAG GTGAGGTGGTCAATGAACCGGCCTCTGCCCGGGTTGCTGGTGTGATTGCCCGCACTGACAATGACGAAGGGTTTTGGGTA TCGCCCTCAAATAAGGGTATTTTTGGAATAATCGGGACCTCGCGCCCGGTTGATTTCAAGCTGGGCGATCAGGCAAGCCG AGCGAACCTGCTCAACAGCAATGACGTCGCTACGATCATCCGTCAGGACGGGTTCCGCCTTTGGGGGAACCGCGCGCCCA CAGCCGATCCAAAGTGGCAATACCTCTGTGTGCGGCGCACCGCAGATGTGTTGAATGAAAGCATCCAGCGCACGCATCTT TGGGCCGTGGACCGTGGGATTTCCAAGACCTACATCGAGGACGTGGTCGAAGGGGTGAACGCCTTTATCGCGGGGCTGGT TGCGCAAGGTGCGATCCTCGGTGGTACGTGCTGGGCTGATCCGGATTTGAACACCCCCGAGAGCATTGCCAACGGGCAGG TGTGGTTCAACTTTGACTTTACACCCGTGTACCCAGCCGAGCGGGTGACCTTCCGCTCTCACCTGACAAATGAGTACATC ACGGAGGCGCTGGGCTAA
Upstream 100 bases:
>100_bases GAATCTGACCCTCTGGCTATACCGAAGGAAAACCGCCAGAGGCGCTTATCGCTCGCGCTCGCGATGATTGCAGCAACATG CAATTTGCAGCGAGGGTAAA
Downstream 100 bases:
>100_bases TGTCTATTCGCAACATTCTGAAAAACTTCAATCTGTTCGTTGACGGGCGGGGCTTTGCTGGTGAGCTGGGCGACTACACC CCGCCAAGCCCGTCTATCGC
Product: phage tail sheath protein
Products: NA
Alternate protein names: Tail Sheath Protein; Phage Tail Sheath Protein FI; Bacteriophage Tail Sheath Protein; Tail Sheath Protein FI; Phage Tail Sheath Protein; Phage-Related Tail Sheath Protein; Bacteriophage Tail Sheath Protein; LOW QUALITY PROTEIN Phage Tail Sheath Protein; Phage-Related Tail Protein; Phage TAIL SHEATH PROTEIN; Phage SPO1 DNA Polymerase-Related Protein; Phage Tail Sheath-Like Protein; Prophage; Prophage Tail Sheath; Phage P2 Tail Sheath FI-Like Protein; Phage Tail Sheath Family Protein; Phage Tail-Like Protein; Tail Sheath Protein Bacteriophage; Bacteriophage P2 Tail Sheath Protein GPFI; Phage Tail Sheath Protein FI-Like Protein; Pyocin R2_PP Tail Sheath Protein GpFI; Pyocin R2_PP Tail Sheath Protein; Bacteriophage Tail Sheath Protein FI; Phage-Related Tail Sheath Protein; Bacteriophage P2 Tail Sheath Protein; Bacteriophage Contractile Tail Sheath Protein
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MAGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKLDTTDDGTGGGTLPAALDGIF DQIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVHALSGAESVVGFAPRILIAPGWTHQRPEDAGNPGSYLANPV VAELEGIANRIGAVIIADGPNTTDADAHTYAGDWGTSGRIYVVDPWVKVLDSAGEVVNEPASARVAGVIARTDNDEGFWV SPSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATIIRQDGFRLWGNRAPTADPKWQYLCVRRTADVLNESIQRTHL WAVDRGISKTYIEDVVEGVNAFIAGLVAQGAILGGTCWADPDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYI TEALG
Sequences:
>Translated_405_residues MAGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKLDTTDDGTGGGTLPAALDGIF DQIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVHALSGAESVVGFAPRILIAPGWTHQRPEDAGNPGSYLANPV VAELEGIANRIGAVIIADGPNTTDADAHTYAGDWGTSGRIYVVDPWVKVLDSAGEVVNEPASARVAGVIARTDNDEGFWV SPSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATIIRQDGFRLWGNRAPTADPKWQYLCVRRTADVLNESIQRTHL WAVDRGISKTYIEDVVEGVNAFIAGLVAQGAILGGTCWADPDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYI TEALG >Mature_404_residues AGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKLDTTDDGTGGGTLPAALDGIFD QIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVHALSGAESVVGFAPRILIAPGWTHQRPEDAGNPGSYLANPVV AELEGIANRIGAVIIADGPNTTDADAHTYAGDWGTSGRIYVVDPWVKVLDSAGEVVNEPASARVAGVIARTDNDEGFWVS PSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATIIRQDGFRLWGNRAPTADPKWQYLCVRRTADVLNESIQRTHLW AVDRGISKTYIEDVVEGVNAFIAGLVAQGAILGGTCWADPDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYIT EALG
Specific function: Unknown
COG id: COG3497
COG function: function code R; Phage tail sheath protein FI
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42662; Mature: 42531
Theoretical pI: Translated: 4.22; Mature: 4.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKL CCCCCCCCEEEEECCCCCCHHHCCHHHHHEEECCCCCCCCCCCCCCCEEEECCCCCEEEC DTTDDGTGGGTLPAALDGIFDQIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVH CCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEE ALSGAESVVGFAPRILIAPGWTHQRPEDAGNPGSYLANPVVAELEGIANRIGAVIIADGP HHCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCEEEEECCC NTTDADAHTYAGDWGTSGRIYVVDPWVKVLDSAGEVVNEPASARVAGVIARTDNDEGFWV CCCCCCCCEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEE SPSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATIIRQDGFRLWGNRAPTADPKWQ CCCCCCEEEEECCCCCCEEEECCCHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCEE YLCVRRTADVLNESIQRTHLWAVDRGISKTYIEDVVEGVNAFIAGLVAQGAILGGTCWAD EEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEECC PDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYITEALG CCCCCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AGFLHGVEVLEIDTGPRPIQAIPTSVIGIVGTAPAADETAFPLNTPVLVAGSRLEAAKL CCCCCCCEEEEECCCCCCHHHCCHHHHHEEECCCCCCCCCCCCCCCEEEECCCCCEEEC DTTDDGTGGGTLPAALDGIFDQIGAVVIVVRVDEGVDEAATLANVIGGVNATDGQFEGVH CCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEE ALSGAESVVGFAPRILIAPGWTHQRPEDAGNPGSYLANPVVAELEGIANRIGAVIIADGP HHCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCEEEEECCC NTTDADAHTYAGDWGTSGRIYVVDPWVKVLDSAGEVVNEPASARVAGVIARTDNDEGFWV CCCCCCCCEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEE SPSNKGIFGIIGTSRPVDFKLGDQASRANLLNSNDVATIIRQDGFRLWGNRAPTADPKWQ CCCCCCEEEEECCCCCCEEEECCCHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCEE YLCVRRTADVLNESIQRTHLWAVDRGISKTYIEDVVEGVNAFIAGLVAQGAILGGTCWAD EEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEECC PDLNTPESIANGQVWFNFDFTPVYPAERVTFRSHLTNEYITEALG CCCCCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA