| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081122
Identifier: 99081122
GI number: 99081122
Start: 1378246
End: 1380720
Strand: Reverse
Name: 99081122
Synonym: TM1040_1281
Alternate gene names: NA
Gene position: 1380720-1378246 (Counterclockwise)
Preceding gene: 99081123
Following gene: 99081121
Centisome position: 43.13
GC content: 61.09
Gene sequence:
>2475_bases ATGGCAAAAAATCAGCGCCTTAACGCCACTGTGACCATCGGCGGTGTTGTTGAAAATTCCTTCCGCAAGGGTATCGGTTT TGTCCGGTCGGGCTTTGACAAGGTCGGGCAAAGCATCCGCGATGTTAAAGAACGCCAGAAAGAGCTTTCGCGCACGCGCA AAGACCTTGAGAAACAGGGCAAATCGGTCGAGCACCTGGACCGCGAGTATGAAGCATTAGAGCGCACGCTCGAGGATCTG GCGCGCAAACAGAGGCGCTGGGAGCGCGCGATGCGCGACAGCGCCCGGGTCGGCAAAACCTTTGGCGATATGACCCAACG GATCGGACGGCTCGCAAGGCAATCGGCAATTGGAATTACAGCGGTTGGCGCCGGGATCTTCGCGCTGACCAGTTCAACGG CTTCATACGGTGACCAGGTTGCCAAAACGGCAGGGAAGCTCGGGATCGGGATCGAGGCGTTACAGGAATACCGCTATGCG GCCGAGCGCTCTGGGGTGTCGACAGAGACGTTCGATAGCTCACTGACAGCAATGCAGAAGCGCCTGGGCGAGGCAGCGCA AGGCACGGGTGCCGCGAAAAAAGCGCTCGACCAGATCGGCCTGAGTGCAAGCGACCTGATAGCCATGGGGCCAGAGCGCG CCATGGGTGCAATCGCGGACAAACTGCAGGGTATCGAAGCGCCAGCCGAACGCGCGGCGATTGCTGCGGCATTGTTCAGC CGGTCGGGGATCGGCATGGTAAACATGCTCGGAAACGGATCGGATGCGCTGGAACAACTGCGCGAAGACGCCCGGCGCAC CGGCTATGTCTTGAGCGAGGAAGCTGCGCGGGACGCAGAAGCTTTTGCCGACGCACAGCTAGATGCGCAACTGTCGATCA AAGGCCTGAAAAACACCATCGGGTCAGAGCTGATGCCTGTGGTCACCCGGTCGATGCAGCGGTTTAGCGAATGGGCCGTG ACCAATCGCGACGACGTTGCAGCCTTTGCTGATACCGCCGCAACCAAGCTTGAGGCAGCTTTGCCTGTGATCGGTCAAAT CGCCGAGGGCATGGGTGATGTGTCTAAGGCAGTCGGTGGCGTGATCTCCAAAACGGCGGAAATGGTCGGGGGCTGGAAGA ATTTCGGAATCGTCGTCGGCACGGTCTTGGCCGGTCGCACCATCGCCAGCGTGCTCAATTTCGGCTGGGCGGTCGGTCGC CTCGGCGTCTCTATGGCGGCGCTTGTGCCGTGGGGGGCCGCAGGAGCTGGCGCGATGAAGTTGTTCGCTGGTGGGCTTGC CCTGGTCAAGACGGGCGTTCTTGCTGTCGGGCGGGCTTTGCTGATGAACCCCATTGGGCTTGCCGTGGCCGGGATCGCGG GATCTGCTTACCTGATCTATGAAAACTGGGAGAAGGTCGGGCCGTGGTTCGCCGAACTATGGGATGGCGTGAAGGGTCAT TTCGGCGGGCTTGGTCGATTTGTCTCTGGTGTCTGGCGGGGTGACATGGATGCCGCCGCTGCAGGCCTGTCCGACGCTTG GGGATCAGCAAAGGCGGTCTTCTCGACAGTGTTCGACGGGATCACTGGAGTTTTTCGTTTTGCATGGGAGAACGGGATAA AGCCGATCACCGACAAGCTGGGGATTACAAGCCACATCACAGCAGCGTGGGACATCGCCCGCACGATGATCGGGACCGCT ATTGGCGAAATCGGCGTCGTGCTCGAAACTGCGTATGACGGCAGTATCGGACCTGTGATCGAGGCACTGGGCGCAACCGG CGGGATCTCCGCCGCGTGGGAAGAGGTCAAAACCGCTGTCGGCGCTGTGATCGAATGGCTGGCGCAAAAGTTCGTTTGGC TGATGGAAAAGCTGCAACCCGTCCTCGATGGCCTGTCATGGCTCCGGGACAAGGGTGCGGGAGCCGTCGCGGGCATCCAG GGAATCGGCGACAGCATCAGTAACGGTGTCAGCAATCTGTTCGGCGGTGGCGATAGCAGTGGCGATGAAGGGCCGGCCAA TCCGCGCAGCGGTCGCGCAAAGCCCATAAGGATTTCTGGTTCCTATTTAGGCGGCACCATCGGGCGTGGCTTCCGCGAGG TTGGAGAACAAGGGCCTGAGACGATCTGGACCTCGAAGGGCGGCTATGTGGCACACGCAAACGCGACAGAGCGTCTGGCG CGTCTGTCTGAGCGCGCTGGGCCTGTTCTGGATGCTTTGGGTGCTGGCCTGCAGAGGGCCATGGCGGGCGCGCAGCAAGC CGTCGCGCCGGTGTTGCAGCGTATCGAGGTCACAGGCGATCAGATGCAGGGTCGGGTAGCTTCTCCGCAGACGCATGCTG CTCAGGCCGCGCCGGTTGTGATCCATGCACAAATTCATGCTGGCAGTATGAGCCCGCAGAGTCTCATCGACGAGCTCGAG CGCCGCGGGCGCGAAGCGCAGGCAGGGGCGCTCTATGACCAGGCTCACAATTATGGGCAATACGGGGGCGCATGA
Upstream 100 bases:
>100_bases GTGCTGCTGATCGCACGCGAGACCGGCTGGTCGTGCGCCGAGATCTCCGCAATGAGCGTCAGTCGCATGACGTGGTGGCT TGAAGGCCTGAGGGAAATCA
Downstream 100 bases:
>100_bases TGGCCGGAACGATGATGCAACTCGGCGCCTACCAGTTCAGTATCGACAACGCTGCCTATCAAAACCTTGAGAGGTCGACC GAATACCGCTGGGCTGCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Tail Tape Measure Protein; Phage-Related Tail Transmembrane Protein; Phage Related Protein; Phage Tail Fiber Protein; Bacteriophage Tail Protein; Methyl-Accepting Chemotaxis Protein; Bacteriophage Tail Protein/Phage Tail Tape Measure Protein
Number of amino acids: Translated: 824; Mature: 823
Protein sequence:
>824_residues MAKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQGKSVEHLDREYEALERTLEDL ARKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGITAVGAGIFALTSSTASYGDQVAKTAGKLGIGIEALQEYRYA AERSGVSTETFDSSLTAMQKRLGEAAQGTGAAKKALDQIGLSASDLIAMGPERAMGAIADKLQGIEAPAERAAIAAALFS RSGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAEAFADAQLDAQLSIKGLKNTIGSELMPVVTRSMQRFSEWAV TNRDDVAAFADTAATKLEAALPVIGQIAEGMGDVSKAVGGVISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGR LGVSMAALVPWGAAGAGAMKLFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGH FGGLGRFVSGVWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKLGITSHITAAWDIARTMIGTA IGEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAVGAVIEWLAQKFVWLMEKLQPVLDGLSWLRDKGAGAVAGIQ GIGDSISNGVSNLFGGGDSSGDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPETIWTSKGGYVAHANATERLA RLSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQTHAAQAAPVVIHAQIHAGSMSPQSLIDELE RRGREAQAGALYDQAHNYGQYGGA
Sequences:
>Translated_824_residues MAKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQGKSVEHLDREYEALERTLEDL ARKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGITAVGAGIFALTSSTASYGDQVAKTAGKLGIGIEALQEYRYA AERSGVSTETFDSSLTAMQKRLGEAAQGTGAAKKALDQIGLSASDLIAMGPERAMGAIADKLQGIEAPAERAAIAAALFS RSGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAEAFADAQLDAQLSIKGLKNTIGSELMPVVTRSMQRFSEWAV TNRDDVAAFADTAATKLEAALPVIGQIAEGMGDVSKAVGGVISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGR LGVSMAALVPWGAAGAGAMKLFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGH FGGLGRFVSGVWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKLGITSHITAAWDIARTMIGTA IGEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAVGAVIEWLAQKFVWLMEKLQPVLDGLSWLRDKGAGAVAGIQ GIGDSISNGVSNLFGGGDSSGDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPETIWTSKGGYVAHANATERLA RLSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQTHAAQAAPVVIHAQIHAGSMSPQSLIDELE RRGREAQAGALYDQAHNYGQYGGA >Mature_823_residues AKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQGKSVEHLDREYEALERTLEDLA RKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGITAVGAGIFALTSSTASYGDQVAKTAGKLGIGIEALQEYRYAA ERSGVSTETFDSSLTAMQKRLGEAAQGTGAAKKALDQIGLSASDLIAMGPERAMGAIADKLQGIEAPAERAAIAAALFSR SGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAEAFADAQLDAQLSIKGLKNTIGSELMPVVTRSMQRFSEWAVT NRDDVAAFADTAATKLEAALPVIGQIAEGMGDVSKAVGGVISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGRL GVSMAALVPWGAAGAGAMKLFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGHF GGLGRFVSGVWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKLGITSHITAAWDIARTMIGTAI GEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAVGAVIEWLAQKFVWLMEKLQPVLDGLSWLRDKGAGAVAGIQG IGDSISNGVSNLFGGGDSSGDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPETIWTSKGGYVAHANATERLAR LSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQTHAAQAAPVVIHAQIHAGSMSPQSLIDELER RGREAQAGALYDQAHNYGQYGGA
Specific function: Unknown
COG id: COG5283
COG function: function code S; Phage-related tail protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86346; Mature: 86215
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: PS00107 PROTEIN_KINASE_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQG CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KSVEHLDREYEALERTLEDLARKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGIT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH AVGAGIFALTSSTASYGDQVAKTAGKLGIGIEALQEYRYAAERSGVSTETFDSSLTAMQK HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RLGEAAQGTGAAKKALDQIGLSASDLIAMGPERAMGAIADKLQGIEAPAERAAIAAALFS HHHHHHCCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RSGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAEAFADAQLDAQLSIKGLKNTI CCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH GSELMPVVTRSMQRFSEWAVTNRDDVAAFADTAATKLEAALPVIGQIAEGMGDVSKAVGG HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGRLGVSMAALVPWGAAGAGAMK HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH LFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGH HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCHHHHCHHHHHHHHHHHHH FGGLGRFVSGVWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKL HHHHHHHHHHHHCCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC GITSHITAAWDIARTMIGTAIGEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAV CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHH GAVIEWLAQKFVWLMEKLQPVLDGLSWLRDKGAGAVAGIQGIGDSISNGVSNLFGGGDSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCCC GDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPETIWTSKGGYVAHANATERLA CCCCCCCCCCCCCCEEEEECCHHCHHHHHHHHHHHCCCCCCEEECCCCEEEECCHHHHHH RLSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQTHAAQAAPVV HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCCCEE IHAQIHAGSMSPQSLIDELERRGREAQAGALYDQAHNYGQYGGA EEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure AKNQRLNATVTIGGVVENSFRKGIGFVRSGFDKVGQSIRDVKERQKELSRTRKDLEKQG CCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KSVEHLDREYEALERTLEDLARKQRRWERAMRDSARVGKTFGDMTQRIGRLARQSAIGIT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH AVGAGIFALTSSTASYGDQVAKTAGKLGIGIEALQEYRYAAERSGVSTETFDSSLTAMQK HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RLGEAAQGTGAAKKALDQIGLSASDLIAMGPERAMGAIADKLQGIEAPAERAAIAAALFS HHHHHHCCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RSGIGMVNMLGNGSDALEQLREDARRTGYVLSEEAARDAEAFADAQLDAQLSIKGLKNTI CCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH GSELMPVVTRSMQRFSEWAVTNRDDVAAFADTAATKLEAALPVIGQIAEGMGDVSKAVGG HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VISKTAEMVGGWKNFGIVVGTVLAGRTIASVLNFGWAVGRLGVSMAALVPWGAAGAGAMK HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH LFAGGLALVKTGVLAVGRALLMNPIGLAVAGIAGSAYLIYENWEKVGPWFAELWDGVKGH HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCHHHHCHHHHHHHHHHHHH FGGLGRFVSGVWRGDMDAAAAGLSDAWGSAKAVFSTVFDGITGVFRFAWENGIKPITDKL HHHHHHHHHHHHCCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC GITSHITAAWDIARTMIGTAIGEIGVVLETAYDGSIGPVIEALGATGGISAAWEEVKTAV CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHH GAVIEWLAQKFVWLMEKLQPVLDGLSWLRDKGAGAVAGIQGIGDSISNGVSNLFGGGDSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCCC GDEGPANPRSGRAKPIRISGSYLGGTIGRGFREVGEQGPETIWTSKGGYVAHANATERLA CCCCCCCCCCCCCCEEEEECCHHCHHHHHHHHHHHCCCCCCEEECCCCEEEECCHHHHHH RLSERAGPVLDALGAGLQRAMAGAQQAVAPVLQRIEVTGDQMQGRVASPQTHAAQAAPVV HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCCCEE IHAQIHAGSMSPQSLIDELERRGREAQAGALYDQAHNYGQYGGA EEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA