| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is bcsP31 [H]
Identifier: 99081093
GI number: 99081093
Start: 1347286
End: 1348257
Strand: Reverse
Name: bcsP31 [H]
Synonym: TM1040_1252
Alternate gene names: 99081093
Gene position: 1348257-1347286 (Counterclockwise)
Preceding gene: 99081094
Following gene: 99081092
Centisome position: 42.12
GC content: 60.7
Gene sequence:
>972_bases ATGGTCCTCAAGCACACACTTCTTGCATCTGCTGCAACTGTTGCGCTCGGCTTTGCCGGGGCGGCGTCCGCGGCTGAACA GCAGTTCATCACCATCGGCACCGGTGGCGTGACCGGCGTTTACTACCCTACGGGTGGCGCGATCTGCCGTCTGGTGAACA AAGACCGCAAAGAGCACGGCATTCGCTGCTCCGTGGAATCCACCGGTGGTTCCGTTTACAACACCCGCACCATCCGTGAA GGCGAGCTGGAGTTCGGCGTTGTCCAGTCCGACGTTCAGAAGGCTGGTCTCGACGGCACCGGCGCATTTGAAGCAGACGG CCCGTTCGAAGGTCTGCGCGCTCTGTTCTCGGTCCACCCGGAGCCGATGCACCTGATGGCGCGCAAGGATGCGGAAATCG CCTCCGTCGACGATCTGAAGGGCAAGAAAGTCAACATCGCGAACCCCGGCTCCGGGACCCGCGTTCTGGCCGAAACCCTG ATGAAATACTCCGGTCTGACCACCGATGATTTTGCGCTGGCAGCAGAGCTGAAGTCCTCCGAGCAGGCCGCGGCGCTGTG CGACGGCAAGATCGACGCAACCATCTGGGCCTCCGGTCTGCCGAATGGTTCGAGCCAGGAAGCGACCTCGTCCTGTGACG TGAACATCGTTCCGCTGTCCGGTGAAAACATTGACACTCTGCTGGCAGAGAACACGCCGTACGCAGCCGCAACCATCCCC GGTGGCATGTATCCGGGTAACCCGGACGACATTCCGTCCTGGGGCCCCAAAGCAACCTTCGTGACCTCCGCTGACGTCTC CGACGAGGTGGTCTACGCTGTTGTAAGCGCGGTCTTCGAAAACTTCGACGACTTCAAAAAGCTGCATCCGGCTTTCTCCC GTCTCTCCGAAGAAGAGATGGTGAGCGACGCACTGTCGGCTGAAATCCACCCCGGCGCGATGAAGTACTACAAAGAGCGC GGCTGGAAGTGA
Upstream 100 bases:
>100_bases CATTAGTTATGTCGTGACTGCAAAAATAACTTGTGGAAGCATCGCGCGCATACTATCGGCACCGCGACCGATTTTAGGTT TTAAATCAGGGAGAGTACTT
Downstream 100 bases:
>100_bases TCCAATCACTTCTTTCGTGAAATCAAAGGCTTTCGCCCCTTTCTTTAAGGGGCGGGAGCCGTTTTCGTTTCAACAAGAGT GCATAACAAACCGGGTGGGG
Product: TRAP transporter solute receptor TAXI family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MVLKHTLLASAATVALGFAGAASAAEQQFITIGTGGVTGVYYPTGGAICRLVNKDRKEHGIRCSVESTGGSVYNTRTIRE GELEFGVVQSDVQKAGLDGTGAFEADGPFEGLRALFSVHPEPMHLMARKDAEIASVDDLKGKKVNIANPGSGTRVLAETL MKYSGLTTDDFALAAELKSSEQAAALCDGKIDATIWASGLPNGSSQEATSSCDVNIVPLSGENIDTLLAENTPYAAATIP GGMYPGNPDDIPSWGPKATFVTSADVSDEVVYAVVSAVFENFDDFKKLHPAFSRLSEEEMVSDALSAEIHPGAMKYYKER GWK
Sequences:
>Translated_323_residues MVLKHTLLASAATVALGFAGAASAAEQQFITIGTGGVTGVYYPTGGAICRLVNKDRKEHGIRCSVESTGGSVYNTRTIRE GELEFGVVQSDVQKAGLDGTGAFEADGPFEGLRALFSVHPEPMHLMARKDAEIASVDDLKGKKVNIANPGSGTRVLAETL MKYSGLTTDDFALAAELKSSEQAAALCDGKIDATIWASGLPNGSSQEATSSCDVNIVPLSGENIDTLLAENTPYAAATIP GGMYPGNPDDIPSWGPKATFVTSADVSDEVVYAVVSAVFENFDDFKKLHPAFSRLSEEEMVSDALSAEIHPGAMKYYKER GWK >Mature_323_residues MVLKHTLLASAATVALGFAGAASAAEQQFITIGTGGVTGVYYPTGGAICRLVNKDRKEHGIRCSVESTGGSVYNTRTIRE GELEFGVVQSDVQKAGLDGTGAFEADGPFEGLRALFSVHPEPMHLMARKDAEIASVDDLKGKKVNIANPGSGTRVLAETL MKYSGLTTDDFALAAELKSSEQAAALCDGKIDATIWASGLPNGSSQEATSSCDVNIVPLSGENIDTLLAENTPYAAATIP GGMYPGNPDDIPSWGPKATFVTSADVSDEVVYAVVSAVFENFDDFKKLHPAFSRLSEEEMVSDALSAEIHPGAMKYYKER GWK
Specific function: Unknown
COG id: COG2358
COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015168 - InterPro: IPR011852 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 34079; Mature: 34079
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLKHTLLASAATVALGFAGAASAAEQQFITIGTGGVTGVYYPTGGAICRLVNKDRKEHG CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHCC IRCSVESTGGSVYNTRTIREGELEFGVVQSDVQKAGLDGTGAFEADGPFEGLRALFSVHP CEEEEECCCCCEEEECEEECCCCEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC EPMHLMARKDAEIASVDDLKGKKVNIANPGSGTRVLAETLMKYSGLTTDDFALAAELKSS CHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCC EQAAALCDGKIDATIWASGLPNGSSQEATSSCDVNIVPLSGENIDTLLAENTPYAAATIP CHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHEEECCCCCEEEECC GGMYPGNPDDIPSWGPKATFVTSADVSDEVVYAVVSAVFENFDDFKKLHPAFSRLSEEEM CCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHH VSDALSAEIHPGAMKYYKERGWK HHHHHHCCCCCHHHHHHHHCCCC >Mature Secondary Structure MVLKHTLLASAATVALGFAGAASAAEQQFITIGTGGVTGVYYPTGGAICRLVNKDRKEHG CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHCC IRCSVESTGGSVYNTRTIREGELEFGVVQSDVQKAGLDGTGAFEADGPFEGLRALFSVHP CEEEEECCCCCEEEECEEECCCCEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC EPMHLMARKDAEIASVDDLKGKKVNIANPGSGTRVLAETLMKYSGLTTDDFALAAELKSS CHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCC EQAAALCDGKIDATIWASGLPNGSSQEATSSCDVNIVPLSGENIDTLLAENTPYAAATIP CHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHEEECCCCCEEEECC GGMYPGNPDDIPSWGPKATFVTSADVSDEVVYAVVSAVFENFDDFKKLHPAFSRLSEEEM CCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHH VSDALSAEIHPGAMKYYKERGWK HHHHHHCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3133283 [H]