Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081072

Identifier: 99081072

GI number: 99081072

Start: 1326112

End: 1326660

Strand: Direct

Name: 99081072

Synonym: TM1040_1231

Alternate gene names: NA

Gene position: 1326112-1326660 (Clockwise)

Preceding gene: 99081071

Following gene: 99081073

Centisome position: 41.43

GC content: 59.93

Gene sequence:

>549_bases
ATGCACGTCACCGCTGAGGAACTTGATGCGGCGCTGCCGCATGTGATGGCCGCCCCGAAGGATCGGGCGGCCATTTCCAT
GTTGTGCCTGCGTCCCGGCTATAATCAGCGCCACTTTGTGGATGAGATTACTGTCACCCCCGAGGGCGGCATTCCCGGCG
AACGCTGGTCGAGCCGACCTTGGCTGCAATTGGACGACGGCAGCGCCCATCCGGGCATTCAGGTCTGCATCCTGTCAAAG
CGGGTGCTGGATCTGGTCTGGCGTCACCGGGAAGAGGTGCCCCATCCGGGCGATACGTTTATCGTCGATATGGATCTGTC
CGAAGAAAACCTCCCCGTGGGGCAGCTGCTGCAGGTGGGTAGCGCGCTGTTGCGGGTGTCGGATGTGTTCAACGATGGCT
GCGTAAAGTGGAAAACCCGCTATGGTGTCGCGGCAAAGGATTGGGTGAACCGGCCAGAAAACCGCGCATTGCGGCTGCGC
GGAATTCTCTGTTCCGTCGCGCAGGCTGGACGCTTTCAATCCGGGGATCTTATGATCAAAAAACAGTGA

Upstream 100 bases:

>100_bases
TCGCACTGGAGATCGAAGACAAGATCCGCGCTGCGCATGGGCTTGATTTCGACATGCCCCCCGAAGCGCAAGACGACGAT
GTTCTGTTTGAAGGCTGACG

Downstream 100 bases:

>100_bases
CCAACCCCACTGTTTTCCTTGGGAATATGCGCCAGGCAACTTGGGCGGTGGACAGCCCTGCATGGGCGCGATAAACCGCT
TTGGACTGTTCCAATCACAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MHVTAEELDAALPHVMAAPKDRAAISMLCLRPGYNQRHFVDEITVTPEGGIPGERWSSRPWLQLDDGSAHPGIQVCILSK
RVLDLVWRHREEVPHPGDTFIVDMDLSEENLPVGQLLQVGSALLRVSDVFNDGCVKWKTRYGVAAKDWVNRPENRALRLR
GILCSVAQAGRFQSGDLMIKKQ

Sequences:

>Translated_182_residues
MHVTAEELDAALPHVMAAPKDRAAISMLCLRPGYNQRHFVDEITVTPEGGIPGERWSSRPWLQLDDGSAHPGIQVCILSK
RVLDLVWRHREEVPHPGDTFIVDMDLSEENLPVGQLLQVGSALLRVSDVFNDGCVKWKTRYGVAAKDWVNRPENRALRLR
GILCSVAQAGRFQSGDLMIKKQ
>Mature_182_residues
MHVTAEELDAALPHVMAAPKDRAAISMLCLRPGYNQRHFVDEITVTPEGGIPGERWSSRPWLQLDDGSAHPGIQVCILSK
RVLDLVWRHREEVPHPGDTFIVDMDLSEENLPVGQLLQVGSALLRVSDVFNDGCVKWKTRYGVAAKDWVNRPENRALRLR
GILCSVAQAGRFQSGDLMIKKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20358; Mature: 20358

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVTAEELDAALPHVMAAPKDRAAISMLCLRPGYNQRHFVDEITVTPEGGIPGERWSSRP
CCCCHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCC
WLQLDDGSAHPGIQVCILSKRVLDLVWRHREEVPHPGDTFIVDMDLSEENLPVGQLLQVG
CEEECCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHH
SALLRVSDVFNDGCVKWKTRYGVAAKDWVNRPENRALRLRGILCSVAQAGRFQSGDLMIK
HHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCCEEEE
KQ
EC
>Mature Secondary Structure
MHVTAEELDAALPHVMAAPKDRAAISMLCLRPGYNQRHFVDEITVTPEGGIPGERWSSRP
CCCCHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCC
WLQLDDGSAHPGIQVCILSKRVLDLVWRHREEVPHPGDTFIVDMDLSEENLPVGQLLQVG
CEEECCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHH
SALLRVSDVFNDGCVKWKTRYGVAAKDWVNRPENRALRLRGILCSVAQAGRFQSGDLMIK
HHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCCEEEE
KQ
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA