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The map label for this gene is ycbB [H]

Identifier: 99081059

GI number: 99081059

Start: 1308297

End: 1309919

Strand: Direct

Name: ycbB [H]

Synonym: TM1040_1218

Alternate gene names: 99081059

Gene position: 1308297-1309919 (Clockwise)

Preceding gene: 99081055

Following gene: 99081060

Centisome position: 40.87

GC content: 60.75

Gene sequence:

>1623_bases
ATGCCGCTGGCTCGCGCCCCGAAATTTGCTTCGTTCGTCACTGGTGGAATTCTTGCCGCCGTTCTGGGGACGACCCTGCT
TTTTGCTGAAAAGGCCGAGGCGGCGAGCACCGGGTTTCGCCAAGCGGTTGCCGAGATGGCGTGGGAGGACGAGGCGGTCT
CCAGCTATTACCGTCAAAACCAATACGCCCCCCTTTGGACCGCAGACACACCAGAGGCGACGGCGCGGCGCCGTGCCCTG
ATGCAGGCGCTCGAAGAGGCCTCCATGCATGGGCTGCCTGATATGTCGGCGCGGGCGGCGGACCTCGTTGAACAGATGCG
CAACGTCCGTTCCACCCGCGATCTTGGCGCGGTCGAGGTTGCTCTGAGCCGGGCCCTGGTGGACTACGCAACGGACTTGC
AGACCGGTCTGATCGACACGCCCGTCCGCATTGACGAAGGCATCGTGCGGGAAAAGCACAAGGTGGATGCGACGCGTTTC
CTCGAGGGGATTGCGACCGATCGCCCGGCAGCCTTCCTGCAGGATCTTGTTCCGACCTCCTCTCAATATCGTGCTCTGCT
GCGCGAGAAGATGCGGCTTGAGGCGCTGCTGCAGGCTGGCGGCTGGGGCGCAACCGTTCCCGTGCGCAAGATCGAGCCGG
GCGACACGGGCCAGAGCGTGCTTGCCCTGCGCAACAGGCTGGTGTCGATGGGCTACCTGGCGCCCACGGCGACACGCAGC
TATGACCTTGATGTTGAGGACGCCGTACGCCGGTTCCAGTCTGAACATGGCCTCGAGGTCGATGGCGTCGCAGGCGAGGG
CACACTCAAGGAGCTGAACCGCCCGGTTTCGGATCGGATCAAGTCGGTTCTGGTCGCCATGGAGCGCGAACGCTGGCTCA
CCCCTGAGCGCGGCCTGCGTCATATCCTTGTGAATCTCACGGATTTCTCGGCCAAGATCATGGATGAGGGTGAAATCTCC
TTTGAGACGCGCTCTGTGATCGGCAGCACCAAAAGCGACCGCCGCACGCCAGAGTTCTCGGACGAGATGGATCATATGGT
GATCAACCCGAGCTGGTATGTCCCGCGCTCGATCATCACCAAGGAATATCTGCCCAAACTCAAGAATAACCCCAACGCCC
ACAGCTACATCGAGATCACCGATAATCGGGGTCGGGTGGTCAATCGAAACAACGTGGACTTTAGCCAGTTCACCGCGCGC
AGCTTTCCGTTTGCCATGCGCCAGCCTCCGAGCAGCCGAAATGCGCTTGGTCTGGTCAAGTTCATGTTCCCGAACAAATA
CAACATCTACCTGCATGACACCCCGCAAAAGCATCTCTTTGGCCGCGAGGTGCGCGCCTTTTCGCATGGCTGCGTCCGTC
TGCATCAACCCTTTGAATTTGCGTATGAACTCTTGACGCCTCAGACGGAGAACCCAAAGGACTACTTCCACCGGGTGCTG
AACAGCGGCAAGGAAACCAAAGTGCCGCTGGAAACCAAGGTGCCGGTGCATCTGATCTATCGCACCGCCTTTGTGTCGCA
GGATGGCCGCGCCGAATTCCGCCGCGATGTCTACGGACGTGACGCAAAGATCTGGTCCGCTTTGGAGCGGGCAGGGGTGG
CACTTCCCGGCGTTCAAGGCTAA

Upstream 100 bases:

>100_bases
CCGGTGAAGCAAATGTGAGTGGACTTGCAAGGGTCTCGTTTACCAACACTCGGATACAGTCTAACTGGACGTCTGCGTTA
CATACTGGAGTTTTTCAACA

Downstream 100 bases:

>100_bases
GTCTCAGGCCAAGATCCGCATTTGGAGGGATGGCCTGATGTTCACCGTTCGTGAAATTGCCACGGCACTTGGCGCGCAGG
CGGCGGGTGATCTAGACCTC

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 539

Protein sequence:

>540_residues
MPLARAPKFASFVTGGILAAVLGTTLLFAEKAEAASTGFRQAVAEMAWEDEAVSSYYRQNQYAPLWTADTPEATARRRAL
MQALEEASMHGLPDMSARAADLVEQMRNVRSTRDLGAVEVALSRALVDYATDLQTGLIDTPVRIDEGIVREKHKVDATRF
LEGIATDRPAAFLQDLVPTSSQYRALLREKMRLEALLQAGGWGATVPVRKIEPGDTGQSVLALRNRLVSMGYLAPTATRS
YDLDVEDAVRRFQSEHGLEVDGVAGEGTLKELNRPVSDRIKSVLVAMERERWLTPERGLRHILVNLTDFSAKIMDEGEIS
FETRSVIGSTKSDRRTPEFSDEMDHMVINPSWYVPRSIITKEYLPKLKNNPNAHSYIEITDNRGRVVNRNNVDFSQFTAR
SFPFAMRQPPSSRNALGLVKFMFPNKYNIYLHDTPQKHLFGREVRAFSHGCVRLHQPFEFAYELLTPQTENPKDYFHRVL
NSGKETKVPLETKVPVHLIYRTAFVSQDGRAEFRRDVYGRDAKIWSALERAGVALPGVQG

Sequences:

>Translated_540_residues
MPLARAPKFASFVTGGILAAVLGTTLLFAEKAEAASTGFRQAVAEMAWEDEAVSSYYRQNQYAPLWTADTPEATARRRAL
MQALEEASMHGLPDMSARAADLVEQMRNVRSTRDLGAVEVALSRALVDYATDLQTGLIDTPVRIDEGIVREKHKVDATRF
LEGIATDRPAAFLQDLVPTSSQYRALLREKMRLEALLQAGGWGATVPVRKIEPGDTGQSVLALRNRLVSMGYLAPTATRS
YDLDVEDAVRRFQSEHGLEVDGVAGEGTLKELNRPVSDRIKSVLVAMERERWLTPERGLRHILVNLTDFSAKIMDEGEIS
FETRSVIGSTKSDRRTPEFSDEMDHMVINPSWYVPRSIITKEYLPKLKNNPNAHSYIEITDNRGRVVNRNNVDFSQFTAR
SFPFAMRQPPSSRNALGLVKFMFPNKYNIYLHDTPQKHLFGREVRAFSHGCVRLHQPFEFAYELLTPQTENPKDYFHRVL
NSGKETKVPLETKVPVHLIYRTAFVSQDGRAEFRRDVYGRDAKIWSALERAGVALPGVQG
>Mature_539_residues
PLARAPKFASFVTGGILAAVLGTTLLFAEKAEAASTGFRQAVAEMAWEDEAVSSYYRQNQYAPLWTADTPEATARRRALM
QALEEASMHGLPDMSARAADLVEQMRNVRSTRDLGAVEVALSRALVDYATDLQTGLIDTPVRIDEGIVREKHKVDATRFL
EGIATDRPAAFLQDLVPTSSQYRALLREKMRLEALLQAGGWGATVPVRKIEPGDTGQSVLALRNRLVSMGYLAPTATRSY
DLDVEDAVRRFQSEHGLEVDGVAGEGTLKELNRPVSDRIKSVLVAMERERWLTPERGLRHILVNLTDFSAKIMDEGEISF
ETRSVIGSTKSDRRTPEFSDEMDHMVINPSWYVPRSIITKEYLPKLKNNPNAHSYIEITDNRGRVVNRNNVDFSQFTARS
FPFAMRQPPSSRNALGLVKFMFPNKYNIYLHDTPQKHLFGREVRAFSHGCVRLHQPFEFAYELLTPQTENPKDYFHRVLN
SGKETKVPLETKVPVHLIYRTAFVSQDGRAEFRRDVYGRDAKIWSALERAGVALPGVQG

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=292, Percent_Identity=35.958904109589, Blast_Score=185, Evalue=5e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 60729; Mature: 60598

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLARAPKFASFVTGGILAAVLGTTLLFAEKAEAASTGFRQAVAEMAWEDEAVSSYYRQN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QYAPLWTADTPEATARRRALMQALEEASMHGLPDMSARAADLVEQMRNVRSTRDLGAVEV
CCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
ALSRALVDYATDLQTGLIDTPVRIDEGIVREKHKVDATRFLEGIATDRPAAFLQDLVPTS
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
SQYRALLREKMRLEALLQAGGWGATVPVRKIEPGDTGQSVLALRNRLVSMGYLAPTATRS
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
YDLDVEDAVRRFQSEHGLEVDGVAGEGTLKELNRPVSDRIKSVLVAMERERWLTPERGLR
CCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHH
HILVNLTDFSAKIMDEGEISFETRSVIGSTKSDRRTPEFSDEMDHMVINPSWYVPRSIIT
HHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHH
KEYLPKLKNNPNAHSYIEITDNRGRVVNRNNVDFSQFTARSFPFAMRQPPSSRNALGLVK
HHHHHHHCCCCCCCEEEEEECCCCCEECCCCCCHHHHHHHCCCHHHCCCCCCCCCEEEEE
FMFPNKYNIYLHDTPQKHLFGREVRAFSHGCVRLHQPFEFAYELLTPQTENPKDYFHRVL
EECCCCEEEEEECCCHHHHHHHHHHHHHHCHHEECCHHHHHHHHHCCCCCCHHHHHHHHH
NSGKETKVPLETKVPVHLIYRTAFVSQDGRAEFRRDVYGRDAKIWSALERAGVALPGVQG
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PLARAPKFASFVTGGILAAVLGTTLLFAEKAEAASTGFRQAVAEMAWEDEAVSSYYRQN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QYAPLWTADTPEATARRRALMQALEEASMHGLPDMSARAADLVEQMRNVRSTRDLGAVEV
CCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
ALSRALVDYATDLQTGLIDTPVRIDEGIVREKHKVDATRFLEGIATDRPAAFLQDLVPTS
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
SQYRALLREKMRLEALLQAGGWGATVPVRKIEPGDTGQSVLALRNRLVSMGYLAPTATRS
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
YDLDVEDAVRRFQSEHGLEVDGVAGEGTLKELNRPVSDRIKSVLVAMERERWLTPERGLR
CCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHH
HILVNLTDFSAKIMDEGEISFETRSVIGSTKSDRRTPEFSDEMDHMVINPSWYVPRSIIT
HHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHH
KEYLPKLKNNPNAHSYIEITDNRGRVVNRNNVDFSQFTARSFPFAMRQPPSSRNALGLVK
HHHHHHHCCCCCCCEEEEEECCCCCEECCCCCCHHHHHHHCCCHHHCCCCCCCCCEEEEE
FMFPNKYNIYLHDTPQKHLFGREVRAFSHGCVRLHQPFEFAYELLTPQTENPKDYFHRVL
EECCCCEEEEEECCCHHHHHHHHHHHHHHCHHEECCHHHHHHHHHCCCCCCHHHHHHHHH
NSGKETKVPLETKVPVHLIYRTAFVSQDGRAEFRRDVYGRDAKIWSALERAGVALPGVQG
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]