Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 99080930

GI number: 99080930

Start: 1163991

End: 1165322

Strand: Reverse

Name: yebA [C]

Synonym: TM1040_1089

Alternate gene names: 99080930

Gene position: 1165322-1163991 (Counterclockwise)

Preceding gene: 99080931

Following gene: 99080929

Centisome position: 36.41

GC content: 61.34

Gene sequence:

>1332_bases
TTGCGCGGCAGACTTTTCTTACGGTTTCATGCGTTCCTTGAGCGTCGGTTCCCCGAGCGGCGGGTCTTTCTCAAATCCGA
CAGCGACACCCGTTTCATACGCCTGAGCTCCGAGACCCAGATCGTCGCGGTCGCAGGGCTGACGCTGTTTGTGTCTTGGT
CGATCGTCGCCACCGCCATCGTTCTGATGGACAGCATCGGCTCTGGCAATTTCCGCGATCAGGCGCGGCGCGACCAGCAG
GTCTATCAGGAACGCCTGAATGCGCTCTCGTCGGAACGCGACCGCCGCGCCGAAGAGGCGCTGGCCGCACAGGATCGCTT
TAATGCGGCGCTTGAGCAGATCTCCACCATGCAGTCCGAGCTTCTGGCCTCAGAGACCCGCCGCCGCGAGCTTGAGACCG
GGATCGACGTGATCCAGTCGAACCTGCGCAAGGCCATCAGCGAGCGGGAACTTTTGAAACGCACCGTGCTGGAACTGCGC
GAGAAAACCGCGCCCGACAGCCCCGAGCAGGTGCTCGCGGCAACCGCGCCAGAGCAGCTCGAATTCCTGACCACGGCGCT
GGCGGAAACCGCTGCCGAGCGCGACAAGATCGAATCCAATGCCCAATCCGCCCTTGCACAGCGTGATGATCTGGAGCTGG
AACTGCGCCTCAGCGCACAGCGCAACGATCAGATCTTCCGCCAGCTCGAAGAGGCGATGGCGATTTCCGTGGAGCCTCTG
AACAAGATGTTCTCCTCTGCGGGCCTGCCGCCCGATCGTATTCTGGAGCAGGTGCGCCGCGGCTATAATGGCGAAGGCGG
CCCGCTGGAGCCCTTGTCGCTCTCGACCCGTGGCGAAGAGCCAAGCCCCGATGAAATCCGCGCCAATGCGCTTCTTAATC
AGATGAGCCAGCTCAACCTCTACCGGATAGCGGCCGCTCAGGCCCCCTTCTCGGTCCCCGTGAACCTCGGCCAGGTGCGC
CAGACCTCTGGCTTTGGCTATCGCCGCGACCCCAAGACGGGTGGTCGCAGGCTCCATAAAGGATCGGATTTTGCGGGCAG
CACCGGCACCGACATCTTTGCCACCGCCGACGGTGTTGTCACCCATGCGGGCTGGCAGTCGGGCTATGGCAGGCTCGTCA
AGATCCAACATGCCTTTGGCATCGAAACCAGATATGCCCATAATTCCAACCTGCGCGTCAAAGTCGGCCAAAGGGTCTCG
CGCGGGGATCACATTGCTGATATGGGTAACACCGGACGGTCCACCGGGACCCACCTCCATTACGAGGTCAGGGTCAATGG
TAAACCCGTAAACCCCATGATCTACATCAAGGCTGCGAGAAATGTTTTCTAA

Upstream 100 bases:

>100_bases
CCACAGTCTGGCTATTCCATTCGGCCAAGGTAGGTTGCCCACAAGCTCCCAACAGCAGGAGAGGCGCAACCTCACAGGGG
TGGAATGAGGATAGCAGGCT

Downstream 100 bases:

>100_bases
GAGCAAAATCAACGAGCCCGGCCCGAAACAAGCCGATACCGCAACGGCAACCCCGGCCTCCAGCCCGGCGCCTTCTTCGA
GCAGCGCATCCTCTGGTGCC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MRGRLFLRFHAFLERRFPERRVFLKSDSDTRFIRLSSETQIVAVAGLTLFVSWSIVATAIVLMDSIGSGNFRDQARRDQQ
VYQERLNALSSERDRRAEEALAAQDRFNAALEQISTMQSELLASETRRRELETGIDVIQSNLRKAISERELLKRTVLELR
EKTAPDSPEQVLAATAPEQLEFLTTALAETAAERDKIESNAQSALAQRDDLELELRLSAQRNDQIFRQLEEAMAISVEPL
NKMFSSAGLPPDRILEQVRRGYNGEGGPLEPLSLSTRGEEPSPDEIRANALLNQMSQLNLYRIAAAQAPFSVPVNLGQVR
QTSGFGYRRDPKTGGRRLHKGSDFAGSTGTDIFATADGVVTHAGWQSGYGRLVKIQHAFGIETRYAHNSNLRVKVGQRVS
RGDHIADMGNTGRSTGTHLHYEVRVNGKPVNPMIYIKAARNVF

Sequences:

>Translated_443_residues
MRGRLFLRFHAFLERRFPERRVFLKSDSDTRFIRLSSETQIVAVAGLTLFVSWSIVATAIVLMDSIGSGNFRDQARRDQQ
VYQERLNALSSERDRRAEEALAAQDRFNAALEQISTMQSELLASETRRRELETGIDVIQSNLRKAISERELLKRTVLELR
EKTAPDSPEQVLAATAPEQLEFLTTALAETAAERDKIESNAQSALAQRDDLELELRLSAQRNDQIFRQLEEAMAISVEPL
NKMFSSAGLPPDRILEQVRRGYNGEGGPLEPLSLSTRGEEPSPDEIRANALLNQMSQLNLYRIAAAQAPFSVPVNLGQVR
QTSGFGYRRDPKTGGRRLHKGSDFAGSTGTDIFATADGVVTHAGWQSGYGRLVKIQHAFGIETRYAHNSNLRVKVGQRVS
RGDHIADMGNTGRSTGTHLHYEVRVNGKPVNPMIYIKAARNVF
>Mature_443_residues
MRGRLFLRFHAFLERRFPERRVFLKSDSDTRFIRLSSETQIVAVAGLTLFVSWSIVATAIVLMDSIGSGNFRDQARRDQQ
VYQERLNALSSERDRRAEEALAAQDRFNAALEQISTMQSELLASETRRRELETGIDVIQSNLRKAISERELLKRTVLELR
EKTAPDSPEQVLAATAPEQLEFLTTALAETAAERDKIESNAQSALAQRDDLELELRLSAQRNDQIFRQLEEAMAISVEPL
NKMFSSAGLPPDRILEQVRRGYNGEGGPLEPLSLSTRGEEPSPDEIRANALLNQMSQLNLYRIAAAQAPFSVPVNLGQVR
QTSGFGYRRDPKTGGRRLHKGSDFAGSTGTDIFATADGVVTHAGWQSGYGRLVKIQHAFGIETRYAHNSNLRVKVGQRVS
RGDHIADMGNTGRSTGTHLHYEVRVNGKPVNPMIYIKAARNVF

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=117, Percent_Identity=47.8632478632479, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=48.4848484848485, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082297, Length=97, Percent_Identity=37.1134020618557, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87082174, Length=99, Percent_Identity=37.3737373737374, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49519; Mature: 49519

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGRLFLRFHAFLERRFPERRVFLKSDSDTRFIRLSSETQIVAVAGLTLFVSWSIVATAI
CCCCEEHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHH
VLMDSIGSGNFRDQARRDQQVYQERLNALSSERDRRAEEALAAQDRFNAALEQISTMQSE
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLASETRRRELETGIDVIQSNLRKAISERELLKRTVLELREKTAPDSPEQVLAATAPEQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHH
EFLTTALAETAAERDKIESNAQSALAQRDDLELELRLSAQRNDQIFRQLEEAMAISVEPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHH
NKMFSSAGLPPDRILEQVRRGYNGEGGPLEPLSLSTRGEEPSPDEIRANALLNQMSQLNL
HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCH
YRIAAAQAPFSVPVNLGQVRQTSGFGYRRDPKTGGRRLHKGSDFAGSTGTDIFATADGVV
HEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEE
THAGWQSGYGRLVKIQHAFGIETRYAHNSNLRVKVGQRVSRGDHIADMGNTGRSTGTHLH
EECCCCCCCCCEEEEEHHHCCCEEEECCCCCEEEECCCCCCCCCHHHCCCCCCCCCCEEE
YEVRVNGKPVNPMIYIKAARNVF
EEEEECCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MRGRLFLRFHAFLERRFPERRVFLKSDSDTRFIRLSSETQIVAVAGLTLFVSWSIVATAI
CCCCEEHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHH
VLMDSIGSGNFRDQARRDQQVYQERLNALSSERDRRAEEALAAQDRFNAALEQISTMQSE
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLASETRRRELETGIDVIQSNLRKAISERELLKRTVLELREKTAPDSPEQVLAATAPEQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHH
EFLTTALAETAAERDKIESNAQSALAQRDDLELELRLSAQRNDQIFRQLEEAMAISVEPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHH
NKMFSSAGLPPDRILEQVRRGYNGEGGPLEPLSLSTRGEEPSPDEIRANALLNQMSQLNL
HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCH
YRIAAAQAPFSVPVNLGQVRQTSGFGYRRDPKTGGRRLHKGSDFAGSTGTDIFATADGVV
HEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEE
THAGWQSGYGRLVKIQHAFGIETRYAHNSNLRVKVGQRVSRGDHIADMGNTGRSTGTHLH
EECCCCCCCCCEEEEEHHHCCCEEEECCCCCEEEECCCCCCCCCHHHCCCCCCCCCCEEE
YEVRVNGKPVNPMIYIKAARNVF
EEEEECCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]