| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yjbB [H]
Identifier: 99080696
GI number: 99080696
Start: 907552
End: 909198
Strand: Direct
Name: yjbB [H]
Synonym: TM1040_0855
Alternate gene names: 99080696
Gene position: 907552-909198 (Clockwise)
Preceding gene: 99080695
Following gene: 99080697
Centisome position: 28.35
GC content: 61.99
Gene sequence:
>1647_bases TTGACGGCATTTTTGATTCAGATCGCGGGCGCTGCGGCGCTATTGTTGTGGGCGGTGCGTCTGGTGCGCACCGGCGTGGA GCGAGCTTTTGCCACACAGCTGAGACAGGGGCTAAGGCGCGCCTCTGACAATCGCCTGCTGGCCGCTTTTTCGGGGCTGG TGTCGGCGATGATGCTGCAGAGCTCCACCGCCGTGGCCATGCTGGTATCGAACTTTGCCAGCAAGGGCGCGCTCAGTATC GCGGTTGGGATTGCCATGTTGCTCGGGGCGGATCTTGGCTCTGCCCTTGTGGCGCAGATCCTTCTGGCCCGTCCGGGCAT TCTGGTGCCTGCGCTCCTTCTGGTGGGGGTGGCGCTGTTCCTGCGCAGCGAACAGCGTAAACTGCGCCAGACCGGGCGTA TCCTGATCGGGCTTGCGCTGATTTTTGTCTCGCTCGACATGCTGCGCACCGCCACAGCACCAATCATCGAGAGCAAGGGC GCTGTCGCGGTACTGGGGTATCTCGATTCCGACCTTTTCACGGCCTTTATTCTCGGGGCGATCTTTGCCTGGGTGGTGCA CTCCAGCGTTGCGGCGATCTTGTTGTTTGTCACCATGGTCGCCCAGGGCGCGCTGCCGCCGATGGCGGCGATGGCGATGG TGCTTGGCGCCAACCTTGGCGGCGCCATGATCGCCTTTGTGCTGACGCTTGCTGCCGATGTGCGCGCGCGGCGTATCGTG AGCGCCAATCTCGTCTTGCGAGGCGGCGGAGCGCTTGCGGTGCTCTTGGCGCTGAACCTGAACCTTCTGGACCCCACGTG GCTCGGGCAGGCGGCTGCCGCTCAAGTGATGGGGCTGCATCTGGTCTTCAATCTTGTGCTCTGTCTGCTGGCGCTGCCCT TTGTGGGGCTCATCGCCCGCATGAGCGAGCGGGTGATGCGCGACCCCAATGTGCAATCTCTGGGGCGCGGGATGACGGCC TTGGACCCCGCCGCGCTCGAGGACCCGCCGCGTGCGCTGAACTGTGCCGCGCGCGAGCTGTTGCGCATGGGTGAAGTCAT CGAGAAAATGCTGGTTGCGGCCATGGGGCTCTATGAAGTCTGGGATGACCGCGTCGCCGAGGCGATCCGTGACGAGGATA AGGCACTGCGGCAGATGCATCTCGACCTCAAGCTCTATCTGGCGGGGATGAACCGTCACAAGCTGGATGACAGCGCCGTC AATGGCGCGATCGAGGCATCGCTCATGGCCGCCAACCTGGAGGCGGCCGCCGATCAGGTGGCCCGCAAAATGACCGATCT GGCGCGCAAGCTCTCGCTTGAAGGGATCAGCTTTTCCAAGAGTGGCCAGCAGGAAATCAACGATTTCATGGACCGCATTC AAGCCAATGTTCAACTCGCGCTAACGGTCATGATGACCCGCAACCCCGATGATGCGCGCGAGCTGGTGGCCGAAAAGGAA AGCATCCGAACCGCCGAACAAAAACTGCAGAGCAAACACCTGTCGCGCCTTCGCGAAGGCGTCAGCGAAAGCATCGAGAC CAGCGCAATCCATCAGGAAACCTTGCGCATTCTCAAACAGGTCAATACCTCTTTTGCGATGGCAGGGTATCCGATCCTCG ACGAATCCGGTGATCTGCTGTCCAGTCGCCTGTCCTCGCAGGGCTGA
Upstream 100 bases:
>100_bases AAGAGCGCAATTCGACCGAGTTGGATCGTCTCGACAACATAAACTCGTCGAAAAATACGTTGGGCTGTGACCCAACCCAG AACGAGGACGGAAGACAGGA
Downstream 100 bases:
>100_bases CCTGTCTGCAGCCGCCTGCCTCCTGTTCCCTCTGATGCGGGAGCGGGCGAATTTCTATAGCAAGGTATTGAAATGAAAGA CTTCCCAAAGATCTGGTTCC
Product: Na+/Pi-cotransporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 548; Mature: 547
Protein sequence:
>548_residues MTAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQSSTAVAMLVSNFASKGALSI AVGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALFLRSEQRKLRQTGRILIGLALIFVSLDMLRTATAPIIESKG AVAVLGYLDSDLFTAFILGAIFAWVVHSSVAAILLFVTMVAQGALPPMAAMAMVLGANLGGAMIAFVLTLAADVRARRIV SANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLHLVFNLVLCLLALPFVGLIARMSERVMRDPNVQSLGRGMTA LDPAALEDPPRALNCAARELLRMGEVIEKMLVAAMGLYEVWDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAV NGAIEASLMAANLEAAADQVARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKE SIRTAEQKLQSKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLLSSRLSSQG
Sequences:
>Translated_548_residues MTAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQSSTAVAMLVSNFASKGALSI AVGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALFLRSEQRKLRQTGRILIGLALIFVSLDMLRTATAPIIESKG AVAVLGYLDSDLFTAFILGAIFAWVVHSSVAAILLFVTMVAQGALPPMAAMAMVLGANLGGAMIAFVLTLAADVRARRIV SANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLHLVFNLVLCLLALPFVGLIARMSERVMRDPNVQSLGRGMTA LDPAALEDPPRALNCAARELLRMGEVIEKMLVAAMGLYEVWDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAV NGAIEASLMAANLEAAADQVARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKE SIRTAEQKLQSKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLLSSRLSSQG >Mature_547_residues TAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQSSTAVAMLVSNFASKGALSIA VGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALFLRSEQRKLRQTGRILIGLALIFVSLDMLRTATAPIIESKGA VAVLGYLDSDLFTAFILGAIFAWVVHSSVAAILLFVTMVAQGALPPMAAMAMVLGANLGGAMIAFVLTLAADVRARRIVS ANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLHLVFNLVLCLLALPFVGLIARMSERVMRDPNVQSLGRGMTAL DPAALEDPPRALNCAARELLRMGEVIEKMLVAAMGLYEVWDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAVN GAIEASLMAANLEAAADQVARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKES IRTAEQKLQSKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLLSSRLSSQG
Specific function: Unknown
COG id: COG1283
COG function: function code P; Na+/phosphate symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yqeW [H]
Homologues:
Organism=Escherichia coli, GI1790451, Length=537, Percent_Identity=33.147113594041, Blast_Score=251, Evalue=1e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003841 - InterPro: IPR004633 [H]
Pfam domain/function: PF02690 Na_Pi_cotrans [H]
EC number: NA
Molecular weight: Translated: 58662; Mature: 58531
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH SSTAVAMLVSNFASKGALSIAVGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALF CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LRSEQRKLRQTGRILIGLALIFVSLDMLRTATAPIIESKGAVAVLGYLDSDLFTAFILGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHHHHHHHHHHHHH IFAWVVHSSVAAILLFVTMVAQGALPPMAAMAMVLGANLGGAMIAFVLTLAADVRARRIV HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH SANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLHLVFNLVLCLLALPFVGLIAR HHCEEEECCCHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MSERVMRDPNVQSLGRGMTALDPAALEDPPRALNCAARELLRMGEVIEKMLVAAMGLYEV HHHHHHCCCCHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAVNGAIEASLMAANLEAAADQV HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKE HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHEEEEEEEECCCHHHHHHHHHHH SIRTAEQKLQSKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHH SSRLSSQG HHHHCCCC >Mature Secondary Structure TAFLIQIAGAAALLLWAVRLVRTGVERAFATQLRQGLRRASDNRLLAAFSGLVSAMMLQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH SSTAVAMLVSNFASKGALSIAVGIAMLLGADLGSALVAQILLARPGILVPALLLVGVALF CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LRSEQRKLRQTGRILIGLALIFVSLDMLRTATAPIIESKGAVAVLGYLDSDLFTAFILGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHHHHHHHHHHHHH IFAWVVHSSVAAILLFVTMVAQGALPPMAAMAMVLGANLGGAMIAFVLTLAADVRARRIV HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH SANLVLRGGGALAVLLALNLNLLDPTWLGQAAAAQVMGLHLVFNLVLCLLALPFVGLIAR HHCEEEECCCHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MSERVMRDPNVQSLGRGMTALDPAALEDPPRALNCAARELLRMGEVIEKMLVAAMGLYEV HHHHHHCCCCHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WDDRVAEAIRDEDKALRQMHLDLKLYLAGMNRHKLDDSAVNGAIEASLMAANLEAAADQV HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ARKMTDLARKLSLEGISFSKSGQQEINDFMDRIQANVQLALTVMMTRNPDDARELVAEKE HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHEEEEEEEECCCHHHHHHHHHHH SIRTAEQKLQSKHLSRLREGVSESIETSAIHQETLRILKQVNTSFAMAGYPILDESGDLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHH SSRLSSQG HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]