Click here to switch to the map view.

The map label for this gene is yhdW [H]

Identifier: 99080694

GI number: 99080694

Start: 905622

End: 906569

Strand: Direct

Name: yhdW [H]

Synonym: TM1040_0853

Alternate gene names: 99080694

Gene position: 905622-906569 (Clockwise)

Preceding gene: 99080693

Following gene: 99080695

Centisome position: 28.29

GC content: 64.24

Gene sequence:

>948_bases
ATGACCGCCTTTCCCCAGGTCGACGCCTATCGCGGCGGCGCGGGGCTGATCCGTGTGATCGGCCACCGCGGCGCGCGCGG
TGTCATGCCCGAAAACACTCTGGAAGGGTTTCGTTTCACTTTCGACATCGGCGTCGATGTGCTGGAGTTCGACGTCGTGA
TGTCATCCGATGGCGTGCCGGTCATCACCCACAACCACGCCTTGTTGCCGTCAGCGGTGCGGGACGGGCAGGGGGCTTGG
CTGCAACGCGAAGACATTAAGGTTGCGGATCTTACCCTGAAAGAGCTGCGCGATCTGGATGTGGGCGGGCTTGATAGCCG
CTCCGACTATGGACGCCGCTTTCCGGATCAGGCCTTCTTGAGTGGCGCGGTGATGCCCACGCTCGCAGAGCTCTGTGCCC
TCGTCCAAGAGCCGCAATACGCCCATGTCTCTCTGCTTCTGGAGCTGAAAACAGACCTCAGTGATCCCGACATCGACGCC
TTGCGGAGCGCACAGGTTGCTGCCGTCGTGGATGTGGTGCGCGCGCATGGTCTGACGGGACGGACGGCACTCCACAGCTT
TGACTGGGCGCTCCTTGATGAGTGTCGCCGCCAAGCGCCAGAGATGCCGACCTCCTATCTATCTGAGGCGCCGCGCGGAG
AGGGGGCCAGCTGCCAGCCGGACGGTGTCACCAAGGCAGGCAACCTGCCAGAGGTGGTGGCCAAGGCCGGAGGGCAGATG
TGGTGTCCCTGGTTTGAGGACGTCACCCCCGAGCTGTTGGACGAGGCGCGCGCCTTGTCGCTGCCGGTTGTTGTCTGGAC
GGTCAACGAGGTGGACGACATTGTGGCCATGATCGAGGCCGGTGTTGATGGCATCGTGACCGATTATCCGGGCCGTGTGC
AGCGCCTGCTGCTCGAGCGCGGCCTTGGTTGGAGCGCGCGAGTGTCGACCCCGCCGGTCGCGGTCTGA

Upstream 100 bases:

>100_bases
CCGGTCATGTAACAGCCGCCCCTGGCACCCTGATGCGGTTTTCAATCGCGCCGGAGAACCTGCATATGTTTGATCCCCAG
ACCGGCAAGCGGGTGGCGGA

Downstream 100 bases:

>100_bases
TCCATGGCAGGCCAAAGTACAGATATCGGCACTGACTGGGCGTTTCAGCGCTATGAGAGCGTGCGTGCAACCCTGCCCGA
GGCCAGTTTTGCGGCGGCCT

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MTAFPQVDAYRGGAGLIRVIGHRGARGVMPENTLEGFRFTFDIGVDVLEFDVVMSSDGVPVITHNHALLPSAVRDGQGAW
LQREDIKVADLTLKELRDLDVGGLDSRSDYGRRFPDQAFLSGAVMPTLAELCALVQEPQYAHVSLLLELKTDLSDPDIDA
LRSAQVAAVVDVVRAHGLTGRTALHSFDWALLDECRRQAPEMPTSYLSEAPRGEGASCQPDGVTKAGNLPEVVAKAGGQM
WCPWFEDVTPELLDEARALSLPVVVWTVNEVDDIVAMIEAGVDGIVTDYPGRVQRLLLERGLGWSARVSTPPVAV

Sequences:

>Translated_315_residues
MTAFPQVDAYRGGAGLIRVIGHRGARGVMPENTLEGFRFTFDIGVDVLEFDVVMSSDGVPVITHNHALLPSAVRDGQGAW
LQREDIKVADLTLKELRDLDVGGLDSRSDYGRRFPDQAFLSGAVMPTLAELCALVQEPQYAHVSLLLELKTDLSDPDIDA
LRSAQVAAVVDVVRAHGLTGRTALHSFDWALLDECRRQAPEMPTSYLSEAPRGEGASCQPDGVTKAGNLPEVVAKAGGQM
WCPWFEDVTPELLDEARALSLPVVVWTVNEVDDIVAMIEAGVDGIVTDYPGRVQRLLLERGLGWSARVSTPPVAV
>Mature_314_residues
TAFPQVDAYRGGAGLIRVIGHRGARGVMPENTLEGFRFTFDIGVDVLEFDVVMSSDGVPVITHNHALLPSAVRDGQGAWL
QREDIKVADLTLKELRDLDVGGLDSRSDYGRRFPDQAFLSGAVMPTLAELCALVQEPQYAHVSLLLELKTDLSDPDIDAL
RSAQVAAVVDVVRAHGLTGRTALHSFDWALLDECRRQAPEMPTSYLSEAPRGEGASCQPDGVTKAGNLPEVVAKAGGQMW
CPWFEDVTPELLDEARALSLPVVVWTVNEVDDIVAMIEAGVDGIVTDYPGRVQRLLLERGLGWSARVSTPPVAV

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 34108; Mature: 33977

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS50007 PIPLC_X_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFPQVDAYRGGAGLIRVIGHRGARGVMPENTLEGFRFTFDIGVDVLEFDVVMSSDGVP
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCCE
VITHNHALLPSAVRDGQGAWLQREDIKVADLTLKELRDLDVGGLDSRSDYGRRFPDQAFL
EEECCCCCCHHHHHCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHH
SGAVMPTLAELCALVQEPQYAHVSLLLELKTDLSDPDIDALRSAQVAAVVDVVRAHGLTG
HCCHHHHHHHHHHHHCCCCHHHHHEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
RTALHSFDWALLDECRRQAPEMPTSYLSEAPRGEGASCQPDGVTKAGNLPEVVAKAGGQM
CHHHHHCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCE
WCPWFEDVTPELLDEARALSLPVVVWTVNEVDDIVAMIEAGVDGIVTDYPGRVQRLLLER
ECCHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHH
GLGWSARVSTPPVAV
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
TAFPQVDAYRGGAGLIRVIGHRGARGVMPENTLEGFRFTFDIGVDVLEFDVVMSSDGVP
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCCE
VITHNHALLPSAVRDGQGAWLQREDIKVADLTLKELRDLDVGGLDSRSDYGRRFPDQAFL
EEECCCCCCHHHHHCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHH
SGAVMPTLAELCALVQEPQYAHVSLLLELKTDLSDPDIDALRSAQVAAVVDVVRAHGLTG
HCCHHHHHHHHHHHHCCCCHHHHHEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
RTALHSFDWALLDECRRQAPEMPTSYLSEAPRGEGASCQPDGVTKAGNLPEVVAKAGGQM
CHHHHHCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCE
WCPWFEDVTPELLDEARALSLPVVVWTVNEVDDIVAMIEAGVDGIVTDYPGRVQRLLLER
ECCHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHH
GLGWSARVSTPPVAV
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]