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The map label for this gene is ugpB [H]

Identifier: 99080690

GI number: 99080690

Start: 901433

End: 902737

Strand: Direct

Name: ugpB [H]

Synonym: TM1040_0849

Alternate gene names: 99080690

Gene position: 901433-902737 (Clockwise)

Preceding gene: 99080688

Following gene: 99080691

Centisome position: 28.16

GC content: 60.92

Gene sequence:

>1305_bases
ATGGGTGTTTCAAAAATTGCACTGAGCTGCGCACTGGCGACCGCTCTGACCGCCGGGGCCGCCTGGGCCGAGACCGAAAT
CCAGTGGTGGCACGCCATGGGCGGCGCCAATGGCGAGCGCATCGACAAGATGGCGGCAGACTTCAACGCCAGCCAGTCCG
AGTATAAAATCGTGCCCACCTACAAGGGCAACTACACTGAAACCATGACCGCCGCCGTGGCCGCGTTCCGCGCGGGTGAG
CAGCCGCACCTTGTACAGGTGTTCGAAGTGGGCACCGCCACCATGATGGCTGCCAAAGGGGCGATCTACCCCATCGAGCA
GATGATGTCCGATGCGGGCGAAGCCTTTGACAAATCCGACTATCTGCCCGCGGTGATTTCTTATTACCAGACCCCCGAGG
GGGAACTGCTGTCGATGCCGTTCAACAGCTCGACACCGGTTCTGTGGTACAATGCCGATGCCTTCAAATCCGCAGGCGTC
GATGTCCCGGAAACCTGGGATGACGTGAAATCCGCTGCTCAGGCGCTGGTCGACAACGGCATGGAGTGCGGCCTGTCCTT
CGGTTGGCAGTCCTGGGTGATGGTTGAGAACTTCTCGGCTTGGCACAACATCGAGATGGGCACCAAGGAAAACGGCTTTG
CCGGGTTCGACACCGAGTTCACCTTCAACAACGAGCAGGTTGCGGCCCGCCTCGAGGACATCGCCTCCATGAGCGAGGGC
AACCTCTTCAAATATGGCGGTCGTCGCGGCGACAGCCTGCCGCTGTTCACCAACGGTGAATGCGGGATGTGGATGAATTC
CTCGGCCTATTACGGCTCCATGGTCGAGCAGGCAGAGTTCGAATTCGGCCAGACCATGCTGCCGCTCGACACCTCGGTTG
CGGACGCGCCTCAGAACTCCATCATCGGCGGTGCGACCCTCTGGGCGCTGGCCGGTCACGAGGCCGAGGAATACAAGGGT
CTGGCGCAGTTCATGACCTATCTTTCCTCGCCCGAAGTTCAGGCATGGTGGCACCAGGAAACCGGCTATGTGCCGATCAC
CACTGCCGCGTATGAGCTGAGCAAGGAGCAGGGTTTCTATGACGAAAACCCCGGCACCGACACCGCGATCAAGCAGCTGA
GCCTGAACGCGCCGACGCCGAACTCCCGCGGGATCCGCTTTGGCAACTTCGTGCAGGTGCGTGACGTGATCAACGAAGAG
CTCGAAGCGCTCTGGGCTGGTGACAAGACCGCCTCCGAAGCCCTCGATGCCGCCGTTGAGCGTGGTAACGCGCTGCTGCG
CAAATTCGAGCGCTCCGCGAAGTAA

Upstream 100 bases:

>100_bases
TTTATAATATACTGTTATGTCACTGTTGTGAAACTTTCACTTGAATTATGACGCATCCTGTCAAATGCTGCCCCTCGAAC
GACCTTTGGAGGAGATAACA

Downstream 100 bases:

>100_bases
TCGCCCAAAGGCTCTACCCGGTCTCGCAGCATTTGCGGGGCCGGGTAGGGCCGTTTTCTATCCTTTTTCTAGAAAGGACC
ATGAGGCGCCTATGCTGAAA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MGVSKIALSCALATALTAGAAWAETEIQWWHAMGGANGERIDKMAADFNASQSEYKIVPTYKGNYTETMTAAVAAFRAGE
QPHLVQVFEVGTATMMAAKGAIYPIEQMMSDAGEAFDKSDYLPAVISYYQTPEGELLSMPFNSSTPVLWYNADAFKSAGV
DVPETWDDVKSAAQALVDNGMECGLSFGWQSWVMVENFSAWHNIEMGTKENGFAGFDTEFTFNNEQVAARLEDIASMSEG
NLFKYGGRRGDSLPLFTNGECGMWMNSSAYYGSMVEQAEFEFGQTMLPLDTSVADAPQNSIIGGATLWALAGHEAEEYKG
LAQFMTYLSSPEVQAWWHQETGYVPITTAAYELSKEQGFYDENPGTDTAIKQLSLNAPTPNSRGIRFGNFVQVRDVINEE
LEALWAGDKTASEALDAAVERGNALLRKFERSAK

Sequences:

>Translated_434_residues
MGVSKIALSCALATALTAGAAWAETEIQWWHAMGGANGERIDKMAADFNASQSEYKIVPTYKGNYTETMTAAVAAFRAGE
QPHLVQVFEVGTATMMAAKGAIYPIEQMMSDAGEAFDKSDYLPAVISYYQTPEGELLSMPFNSSTPVLWYNADAFKSAGV
DVPETWDDVKSAAQALVDNGMECGLSFGWQSWVMVENFSAWHNIEMGTKENGFAGFDTEFTFNNEQVAARLEDIASMSEG
NLFKYGGRRGDSLPLFTNGECGMWMNSSAYYGSMVEQAEFEFGQTMLPLDTSVADAPQNSIIGGATLWALAGHEAEEYKG
LAQFMTYLSSPEVQAWWHQETGYVPITTAAYELSKEQGFYDENPGTDTAIKQLSLNAPTPNSRGIRFGNFVQVRDVINEE
LEALWAGDKTASEALDAAVERGNALLRKFERSAK
>Mature_433_residues
GVSKIALSCALATALTAGAAWAETEIQWWHAMGGANGERIDKMAADFNASQSEYKIVPTYKGNYTETMTAAVAAFRAGEQ
PHLVQVFEVGTATMMAAKGAIYPIEQMMSDAGEAFDKSDYLPAVISYYQTPEGELLSMPFNSSTPVLWYNADAFKSAGVD
VPETWDDVKSAAQALVDNGMECGLSFGWQSWVMVENFSAWHNIEMGTKENGFAGFDTEFTFNNEQVAARLEDIASMSEGN
LFKYGGRRGDSLPLFTNGECGMWMNSSAYYGSMVEQAEFEFGQTMLPLDTSVADAPQNSIIGGATLWALAGHEAEEYKGL
AQFMTYLSSPEVQAWWHQETGYVPITTAAYELSKEQGFYDENPGTDTAIKQLSLNAPTPNSRGIRFGNFVQVRDVINEEL
EALWAGDKTASEALDAAVERGNALLRKFERSAK

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=420, Percent_Identity=49.047619047619, Blast_Score=433, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47452; Mature: 47321

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVSKIALSCALATALTAGAAWAETEIQWWHAMGGANGERIDKMAADFNASQSEYKIVPT
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEC
YKGNYTETMTAAVAAFRAGEQPHLVQVFEVGTATMMAAKGAIYPIEQMMSDAGEAFDKSD
CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
YLPAVISYYQTPEGELLSMPFNSSTPVLWYNADAFKSAGVDVPETWDDVKSAAQALVDNG
CCHHHHHHHCCCCCCEEECCCCCCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHCC
MECGLSFGWQSWVMVENFSAWHNIEMGTKENGFAGFDTEFTFNNEQVAARLEDIASMSEG
HHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCC
NLFKYGGRRGDSLPLFTNGECGMWMNSSAYYGSMVEQAEFEFGQTMLPLDTSVADAPQNS
CEEEECCCCCCCCCEEECCCCCCEECCCCHHHHHHHHHHHHHCCEECCCCCCCCCCCCCC
IIGGATLWALAGHEAEEYKGLAQFMTYLSSPEVQAWWHQETGYVPITTAAYELSKEQGFY
CCCCHHEEHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEHHHHHHHHHCCCC
DENPGTDTAIKQLSLNAPTPNSRGIRFGNFVQVRDVINEELEALWAGDKTASEALDAAVE
CCCCCCHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RGNALLRKFERSAK
HHHHHHHHHHHHCC
>Mature Secondary Structure 
GVSKIALSCALATALTAGAAWAETEIQWWHAMGGANGERIDKMAADFNASQSEYKIVPT
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEC
YKGNYTETMTAAVAAFRAGEQPHLVQVFEVGTATMMAAKGAIYPIEQMMSDAGEAFDKSD
CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
YLPAVISYYQTPEGELLSMPFNSSTPVLWYNADAFKSAGVDVPETWDDVKSAAQALVDNG
CCHHHHHHHCCCCCCEEECCCCCCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHCC
MECGLSFGWQSWVMVENFSAWHNIEMGTKENGFAGFDTEFTFNNEQVAARLEDIASMSEG
HHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCC
NLFKYGGRRGDSLPLFTNGECGMWMNSSAYYGSMVEQAEFEFGQTMLPLDTSVADAPQNS
CEEEECCCCCCCCCEEECCCCCCEECCCCHHHHHHHHHHHHHCCEECCCCCCCCCCCCCC
IIGGATLWALAGHEAEEYKGLAQFMTYLSSPEVQAWWHQETGYVPITTAAYELSKEQGFY
CCCCHHEEHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEHHHHHHHHHCCCC
DENPGTDTAIKQLSLNAPTPNSRGIRFGNFVQVRDVINEELEALWAGDKTASEALDAAVE
CCCCCCHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RGNALLRKFERSAK
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA