| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99080649
Identifier: 99080649
GI number: 99080649
Start: 854680
End: 855129
Strand: Direct
Name: 99080649
Synonym: TM1040_0808
Alternate gene names: NA
Gene position: 854680-855129 (Clockwise)
Preceding gene: 99080648
Following gene: 99080650
Centisome position: 26.7
GC content: 58.22
Gene sequence:
>450_bases ATGAGCGTCATAGATAACTTCCCCCGGCCAGTGCAGGGCGACGTTTTCCGCATGCTTTGCGGCGAGATGTTGGGCAGCGG CGCGGCGCGCGAAGTATTTGAGTGTGCGTATGACCCGAGCCTGGTTGTGAAGATCGAGAATGCCGCTGGGTCATTCCAGA ACATTGCCGAGTGGCAGATGTGGTGGGACGCTCAGCATATACCGCATGCGGCTGAGTGGCTGGCCCCATGCGTCAGCATC TCGCCATGCGGGATCGTTCTAATCCAGAAGCGAACAACGCCCGCGAAGCGCTACCCGGAGAAGCTGCCCGCATGGCTGAC CGACACAAAGCGCACGAATTACGGAATGATCGGCAAGCGCTTTGTCTGCCACGACTATGGCGTGCATCTCATGTGCAATT CCGGCCTTTCAAAGCGGAAGCGAAAAGTTGAGTGGTGGGACGCAGCATGA
Upstream 100 bases:
>100_bases GCCACAGCCTGCCTACAGGACGCCCGCGCATCGTGGCCGTTGAGGGGCTGCTTCGTCCTTATCTCGGCGCCGGGCCGGGG CAGGCGCGGATGGTGCGCGG
Downstream 100 bases:
>100_bases CCACGATCCGCAGCAAAGTAACCGAAGCTTTCGACAAGATCGCGGCACGGCAGCCCGATGCCATCCAAACGGGCGCTATC CGGCGCGTGGAGACAACGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MSVIDNFPRPVQGDVFRMLCGEMLGSGAAREVFECAYDPSLVVKIENAAGSFQNIAEWQMWWDAQHIPHAAEWLAPCVSI SPCGIVLIQKRTTPAKRYPEKLPAWLTDTKRTNYGMIGKRFVCHDYGVHLMCNSGLSKRKRKVEWWDAA
Sequences:
>Translated_149_residues MSVIDNFPRPVQGDVFRMLCGEMLGSGAAREVFECAYDPSLVVKIENAAGSFQNIAEWQMWWDAQHIPHAAEWLAPCVSI SPCGIVLIQKRTTPAKRYPEKLPAWLTDTKRTNYGMIGKRFVCHDYGVHLMCNSGLSKRKRKVEWWDAA >Mature_148_residues SVIDNFPRPVQGDVFRMLCGEMLGSGAAREVFECAYDPSLVVKIENAAGSFQNIAEWQMWWDAQHIPHAAEWLAPCVSIS PCGIVLIQKRTTPAKRYPEKLPAWLTDTKRTNYGMIGKRFVCHDYGVHLMCNSGLSKRKRKVEWWDAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16930; Mature: 16799
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 8.1 %Cys+Met (Translated Protein) 4.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVIDNFPRPVQGDVFRMLCGEMLGSGAAREVFECAYDPSLVVKIENAAGSFQNIAEWQM CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH WWDAQHIPHAAEWLAPCVSISPCGIVLIQKRTTPAKRYPEKLPAWLTDTKRTNYGMIGKR HHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHCHHHCCHHHCCCCCCCCCCCCCE FVCHDYGVHLMCNSGLSKRKRKVEWWDAA EEEECCCEEEEECCCCHHHHHCCCCCCCC >Mature Secondary Structure SVIDNFPRPVQGDVFRMLCGEMLGSGAAREVFECAYDPSLVVKIENAAGSFQNIAEWQM CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH WWDAQHIPHAAEWLAPCVSISPCGIVLIQKRTTPAKRYPEKLPAWLTDTKRTNYGMIGKR HHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHCHHHCCHHHCCCCCCCCCCCCCE FVCHDYGVHLMCNSGLSKRKRKVEWWDAA EEEECCCEEEEECCCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA