Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080590

Identifier: 99080590

GI number: 99080590

Start: 805880

End: 806239

Strand: Direct

Name: 99080590

Synonym: TM1040_0749

Alternate gene names: NA

Gene position: 805880-806239 (Clockwise)

Preceding gene: 99080589

Following gene: 99080591

Centisome position: 25.18

GC content: 58.06

Gene sequence:

>360_bases
ATGATGATGAACTCCCGTTTTCCTTTGTCACTGATGCTCGTGGCCTCGCTGGGGCTGGTGGCTTGTGGCCAATCGCGCGA
CGACAAGCGTATGCGCTTTGACGGTATCGTGTTCCGCACCAGCGCCAAGCCGATCGACAAGAAGGAAACGCTGCTCAACT
TTCGTGTTGAGGTGCGTGACGCGTTGCAATCCCAGCGTGGTGCGCTGGCGGCTGCGACGCATGAGGCCACGCGCTACTGC
ATTCAGAACTACGGCACTTCGCGGTTTGACTGGACCAACATCACCCCTGACTCTGAGGGCAGCTATCAGATCCAGCTCGA
CAATCGCGATGCCATCTTCACGGGACGTTGCAAACCGTGA

Upstream 100 bases:

>100_bases
TTCAGGGTCTCATTCGCAACTTCCGTGAAGAGATCGAAGATCGCATCAAGGCGCAGAAATCTGGCCGTATGGGCGCGATG
GCAGCGGAATAATCTGAAAG

Downstream 100 bases:

>100_bases
CGCGGATCTCGGCATATCATGGCCGGTTTGGCACAGCGCTATTGAATAACAGCGCGCTGCACTCCCGTGGTTCCATTGGA
ACCACGAAGGAGTCTGTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MMMNSRFPLSLMLVASLGLVACGQSRDDKRMRFDGIVFRTSAKPIDKKETLLNFRVEVRDALQSQRGALAAATHEATRYC
IQNYGTSRFDWTNITPDSEGSYQIQLDNRDAIFTGRCKP

Sequences:

>Translated_119_residues
MMMNSRFPLSLMLVASLGLVACGQSRDDKRMRFDGIVFRTSAKPIDKKETLLNFRVEVRDALQSQRGALAAATHEATRYC
IQNYGTSRFDWTNITPDSEGSYQIQLDNRDAIFTGRCKP
>Mature_119_residues
MMMNSRFPLSLMLVASLGLVACGQSRDDKRMRFDGIVFRTSAKPIDKKETLLNFRVEVRDALQSQRGALAAATHEATRYC
IQNYGTSRFDWTNITPDSEGSYQIQLDNRDAIFTGRCKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13484; Mature: 13484

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMNSRFPLSLMLVASLGLVACGQSRDDKRMRFDGIVFRTSAKPIDKKETLLNFRVEVRD
CCCCCCCCHHHHHHHHHHHEECCCCCCCCEEEECCEEEECCCCCCCCCHHHHHHHHHHHH
ALQSQRGALAAATHEATRYCIQNYGTSRFDWTNITPDSEGSYQIQLDNRDAIFTGRCKP
HHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCC
>Mature Secondary Structure
MMMNSRFPLSLMLVASLGLVACGQSRDDKRMRFDGIVFRTSAKPIDKKETLLNFRVEVRD
CCCCCCCCHHHHHHHHHHHEECCCCCCCCEEEECCEEEECCCCCCCCCHHHHHHHHHHHH
ALQSQRGALAAATHEATRYCIQNYGTSRFDWTNITPDSEGSYQIQLDNRDAIFTGRCKP
HHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA