| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is btrR [H]
Identifier: 99080572
GI number: 99080572
Start: 788430
End: 789647
Strand: Direct
Name: btrR [H]
Synonym: TM1040_0731
Alternate gene names: 99080572
Gene position: 788430-789647 (Clockwise)
Preceding gene: 99080570
Following gene: 99080573
Centisome position: 24.63
GC content: 61.66
Gene sequence:
>1218_bases ATGACTTTGCCCATGACAGAGCGTTTTACCGGCAATTTCACCCAGCAAGACCCCATCCCCGAGGAGGCCATCGCTGCCGC CGTCGAGGTAATGCGCCACGGGCGCATCCATCGCTACAACCTCGCCGGAGAGGAACAGGGCGAAACCGCGTTGCTGGAAC AGGAATTTGCGCAGCTGATGGGGGCAAAATACTGCCTTGCGGTCGCGTCCGGGGGCTATGCGCTTGCCACTGCGCTGCGC GCCGTTGGGGTGGGGCATGGGGACAAAGTGCTCACTAACGCGTTCACATTGGCGCCGGTGCCGGGGGCGATTGCATCGGT CGGCGCAGAGCCGGTGTATGTTGATGTGACCGAGGATCTGACCATCGATCTCGACGACCTCAAGGCCAAGGCGGGCGAGG CAAAGGTCTTGATGCTCAGTCATATGCGCGGCCACCTTTGCGATATGGATCACCTGATGGAAATCTGCACCGCCGCTGGT GTAACCGTCATCGAGGATTGCGCGCATACGATGGGGGCCAGCTGGAATGGCACACCATCCGGGCGCCATGGCCTGATCGG GTGCTATTCCTGCCAGACCTACAAACATGTGAACTCTGGCGAAGGCGGGCTTTTGATCACCGACGATGCAGACGTCGCGG CTCGGGCCATTATGCTCTCTGGGTCCTACATGCTCTATTCGCGCCATCTGGCGGCACCTGAGCCTGAAGTGTTCGAGCGG GTGAAATACGAGACGCCCAATATCTCGGGTCGCATGGACAACCTGCGCGCCGCGATCCTGCGGCCGCAACTGCGCGACCT TGATGCGCAGGTGGCACGCTGGAACGATCGCTACCGCACGCTTGAGGCCGGGGTGAGGGACACACCGGGCCTACGTGTTG TGGAGCGTCCGGAGGCCGAAATCTATGTAGGCTCGTCCTTTCAGTTCCTGCTTCTGGATTGGGCGCCGGAGGCGGTCCAA GACGTGCTCTCGCGCTGTGCAGCACGCGGCGTGGAGCTCAAATGGTTTGGCGGGGCTGAGCCTGTCGCCTTTACCTCGCG CTATGATAGTTGGCGCTATGCGCCCGCGCAGAGCCTGCCAAAAAGCGACCGCATCCTTGCAGGCATCCTCGATATGCGCG TGCCGTTGACCTTTAGTCTTGAGGATTGCGCGCTCATTGCCCGCATCATTCGCGCAGAGGTCAGCGCCGTCTGGCAGGCG CAGGGGCAGCAGGTCTAA
Upstream 100 bases:
>100_bases CAATCTTGGTCAGGTTACCCTGTGGCTTGATCCGAGGGAACCGCAAACCTGCGGCAAGCTGGCACCCTCTGCGCTCTTGA CCTTGCGCGGGCCGCGGATC
Downstream 100 bases:
>100_bases CCGACGCAGACTCTTAAAACCGGCGATTGTTTCCAGCCCTGCATCGCGTGAGGGCCAAAAGGCCTGCGCGCTGCTCTGTG CAACATCAGCGTTGACCGCT
Product: DegT/DnrJ/EryC1/StrS aminotransferase
Products: NA
Alternate protein names: L-glutamine:DOI aminotransferase; L-glutamine:3-amino-2,3-dideoxy-scyllo-inosose aminotransferase; L-glutamine:amino-DOI aminotransferase [H]
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MTLPMTERFTGNFTQQDPIPEEAIAAAVEVMRHGRIHRYNLAGEEQGETALLEQEFAQLMGAKYCLAVASGGYALATALR AVGVGHGDKVLTNAFTLAPVPGAIASVGAEPVYVDVTEDLTIDLDDLKAKAGEAKVLMLSHMRGHLCDMDHLMEICTAAG VTVIEDCAHTMGASWNGTPSGRHGLIGCYSCQTYKHVNSGEGGLLITDDADVAARAIMLSGSYMLYSRHLAAPEPEVFER VKYETPNISGRMDNLRAAILRPQLRDLDAQVARWNDRYRTLEAGVRDTPGLRVVERPEAEIYVGSSFQFLLLDWAPEAVQ DVLSRCAARGVELKWFGGAEPVAFTSRYDSWRYAPAQSLPKSDRILAGILDMRVPLTFSLEDCALIARIIRAEVSAVWQA QGQQV
Sequences:
>Translated_405_residues MTLPMTERFTGNFTQQDPIPEEAIAAAVEVMRHGRIHRYNLAGEEQGETALLEQEFAQLMGAKYCLAVASGGYALATALR AVGVGHGDKVLTNAFTLAPVPGAIASVGAEPVYVDVTEDLTIDLDDLKAKAGEAKVLMLSHMRGHLCDMDHLMEICTAAG VTVIEDCAHTMGASWNGTPSGRHGLIGCYSCQTYKHVNSGEGGLLITDDADVAARAIMLSGSYMLYSRHLAAPEPEVFER VKYETPNISGRMDNLRAAILRPQLRDLDAQVARWNDRYRTLEAGVRDTPGLRVVERPEAEIYVGSSFQFLLLDWAPEAVQ DVLSRCAARGVELKWFGGAEPVAFTSRYDSWRYAPAQSLPKSDRILAGILDMRVPLTFSLEDCALIARIIRAEVSAVWQA QGQQV >Mature_404_residues TLPMTERFTGNFTQQDPIPEEAIAAAVEVMRHGRIHRYNLAGEEQGETALLEQEFAQLMGAKYCLAVASGGYALATALRA VGVGHGDKVLTNAFTLAPVPGAIASVGAEPVYVDVTEDLTIDLDDLKAKAGEAKVLMLSHMRGHLCDMDHLMEICTAAGV TVIEDCAHTMGASWNGTPSGRHGLIGCYSCQTYKHVNSGEGGLLITDDADVAARAIMLSGSYMLYSRHLAAPEPEVFERV KYETPNISGRMDNLRAAILRPQLRDLDAQVARWNDRYRTLEAGVRDTPGLRVVERPEAEIYVGSSFQFLLLDWAPEAVQD VLSRCAARGVELKWFGGAEPVAFTSRYDSWRYAPAQSLPKSDRILAGILDMRVPLTFSLEDCALIARIIRAEVSAVWQAQ GQQV
Specific function: Catalyzes the PLP-dependent transamination of 2-deoxy- scyllo-inosose (DOI) to form 2-deoxy-scyllo-inosamine (DOIA) using L-glutamine as the amino donor. Also catalyzes the transamination of 3-amino-2,3-dideoxy-scyllo-inosose (amino-DOI) into 2- deoxystre
COG id: COG0399
COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the degT/dnrJ/eryC1 family. L-glutamine:2- deoxy-scyllo-inosose/scyllo-inosose aminotransferase subfamily [H]
Homologues:
Organism=Escherichia coli, GI145693159, Length=254, Percent_Identity=31.1023622047244, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI2367285, Length=247, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000653 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]
EC number: NA
Molecular weight: Translated: 44198; Mature: 44067
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPMTERFTGNFTQQDPIPEEAIAAAVEVMRHGRIHRYNLAGEEQGETALLEQEFAQLM CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH GAKYCLAVASGGYALATALRAVGVGHGDKVLTNAFTLAPVPGAIASVGAEPVYVDVTEDL CCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHCEEEECCCCHHHHHCCCCCEEEEECCCC TIDLDDLKAKAGEAKVLMLSHMRGHLCDMDHLMEICTAAGVTVIEDCAHTMGASWNGTPS EEEHHHHHCCCCCCEEEEEHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC GRHGLIGCYSCQTYKHVNSGEGGLLITDDADVAARAIMLSGSYMLYSRHLAAPEPEVFER CCCCCEEEEECCHHCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHH VKYETPNISGRMDNLRAAILRPQLRDLDAQVARWNDRYRTLEAGVRDTPGLRVVERPEAE HHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCE IYVGSSFQFLLLDWAPEAVQDVLSRCAARGVELKWFGGAEPVAFTSRYDSWRYAPAQSLP EEECCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCCCCCCHHCCC KSDRILAGILDMRVPLTFSLEDCALIARIIRAEVSAVWQAQGQQV CCCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TLPMTERFTGNFTQQDPIPEEAIAAAVEVMRHGRIHRYNLAGEEQGETALLEQEFAQLM CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH GAKYCLAVASGGYALATALRAVGVGHGDKVLTNAFTLAPVPGAIASVGAEPVYVDVTEDL CCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHCEEEECCCCHHHHHCCCCCEEEEECCCC TIDLDDLKAKAGEAKVLMLSHMRGHLCDMDHLMEICTAAGVTVIEDCAHTMGASWNGTPS EEEHHHHHCCCCCCEEEEEHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC GRHGLIGCYSCQTYKHVNSGEGGLLITDDADVAARAIMLSGSYMLYSRHLAAPEPEVFER CCCCCEEEEECCHHCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHH VKYETPNISGRMDNLRAAILRPQLRDLDAQVARWNDRYRTLEAGVRDTPGLRVVERPEAE HHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCE IYVGSSFQFLLLDWAPEAVQDVLSRCAARGVELKWFGGAEPVAFTSRYDSWRYAPAQSLP EEECCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCCCCCCHHCCC KSDRILAGILDMRVPLTFSLEDCALIARIIRAEVSAVWQAQGQQV CCCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA