| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yeaH [C]
Identifier: 99080375
GI number: 99080375
Start: 565370
End: 566272
Strand: Direct
Name: yeaH [C]
Synonym: TM1040_0534
Alternate gene names: 99080375
Gene position: 565370-566272 (Clockwise)
Preceding gene: 99080374
Following gene: 99080376
Centisome position: 17.66
GC content: 57.92
Gene sequence:
>903_bases GTGGAAAAAGCCACGGTAGAGACGGAAACCATCGGCACCCGTCGCGCTGGCCTGACAACGGCTGGTACGCCCAACAACCT CAATCTGGTGCGCACCATGCGCAATTCCTTGGGGCGCCGCATCGCGCTGCAGCGCCCGAGCACGCAAACGCAGCGGGACC TGGAGGCGCAGGTCGCCGAATTGGAGGAGATCGAGGCCCGCTCGCCGAGCCAAGACGAATTACTGGCCGAGCTCGTCGCA AAGCTTGATGGCATCAAGCGCAAGCGCCGGGTTGTGGGCTACATCGACCCGCTCGATTTGCGCTATGATACCTTTGTGCC GGAGAAAATCCGCAACTCCCGCGCGGTGGTGTTTTGCCTGATGGATGTTTCGGGCTCGATGCAGGAGCGTGAAAAGGATC TCGCGAAACGGTTTTTCCTGCTTCTACATCTGTTCCTGACGCGTGGCTACGAGCACACGGAGATCGTCTTTGTCCGCCAC ACCCACTATGCGCAGGAAGTGGACGAAGAGACTTTCTTTTATGCCCGCGAAACCGGTGGGACTATTGTCTCTACGGCGCT GGAAAAGATGAAGGAAATCATCGACGAGCGCTATCCGCCGGATGAATGGAACATCTACGGTGCGCAGGCCTCGGACGGGG AGAATTTTGGCAACGACTCGGTGCGGTGTCGCAAGATCCTGACCGAGCAATTGCTGCCGATGTGTCAGTTCTACGCCTAT GTGGAAATCGTCGAAGAAAGCGCGCAGATGCTTTTGGACAATACCGAGGCGGGTGAGGACCTGTGGCAGAACTACCGGCA AGTCAAAGAGGCCTGCCGCCATTTTGAGATGCAGCGCGTCTCGGAGCCGGGTCATATCTATCCGATCTTCCGGGAGTTCT TCCTGCCCAAAGTGAAAGGCTGA
Upstream 100 bases:
>100_bases AGGCTTCTGAGGATGGGGGGGGGATGACGAGTTTTCCTTCACCCTGACACGGGATGAATATCTCGAAATCCTGTTCGACG GGCTGGAGCTGCCGGATCTG
Downstream 100 bases:
>100_bases CCGCGATGGAGACTGCAAAAACCGCCACCGCCCCCCTGTTTGATGGGCCAGAGTGGACGTTTGAGCTCTTGGAGAAGGCC CGCGACGCGATTGAGAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MEKATVETETIGTRRAGLTTAGTPNNLNLVRTMRNSLGRRIALQRPSTQTQRDLEAQVAELEEIEARSPSQDELLAELVA KLDGIKRKRRVVGYIDPLDLRYDTFVPEKIRNSRAVVFCLMDVSGSMQEREKDLAKRFFLLLHLFLTRGYEHTEIVFVRH THYAQEVDEETFFYARETGGTIVSTALEKMKEIIDERYPPDEWNIYGAQASDGENFGNDSVRCRKILTEQLLPMCQFYAY VEIVEESAQMLLDNTEAGEDLWQNYRQVKEACRHFEMQRVSEPGHIYPIFREFFLPKVKG
Sequences:
>Translated_300_residues MEKATVETETIGTRRAGLTTAGTPNNLNLVRTMRNSLGRRIALQRPSTQTQRDLEAQVAELEEIEARSPSQDELLAELVA KLDGIKRKRRVVGYIDPLDLRYDTFVPEKIRNSRAVVFCLMDVSGSMQEREKDLAKRFFLLLHLFLTRGYEHTEIVFVRH THYAQEVDEETFFYARETGGTIVSTALEKMKEIIDERYPPDEWNIYGAQASDGENFGNDSVRCRKILTEQLLPMCQFYAY VEIVEESAQMLLDNTEAGEDLWQNYRQVKEACRHFEMQRVSEPGHIYPIFREFFLPKVKG >Mature_300_residues MEKATVETETIGTRRAGLTTAGTPNNLNLVRTMRNSLGRRIALQRPSTQTQRDLEAQVAELEEIEARSPSQDELLAELVA KLDGIKRKRRVVGYIDPLDLRYDTFVPEKIRNSRAVVFCLMDVSGSMQEREKDLAKRFFLLLHLFLTRGYEHTEIVFVRH THYAQEVDEETFFYARETGGTIVSTALEKMKEIIDERYPPDEWNIYGAQASDGENFGNDSVRCRKILTEQLLPMCQFYAY VEIVEESAQMLLDNTEAGEDLWQNYRQVKEACRHFEMQRVSEPGHIYPIFREFFLPKVKG
Specific function: Unknown
COG id: COG2718
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0229 family [H]
Homologues:
Organism=Escherichia coli, GI1788084, Length=284, Percent_Identity=44.3661971830986, Blast_Score=248, Evalue=4e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006698 [H]
Pfam domain/function: PF04285 DUF444 [H]
EC number: NA
Molecular weight: Translated: 34784; Mature: 34784
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKATVETETIGTRRAGLTTAGTPNNLNLVRTMRNSLGRRIALQRPSTQTQRDLEAQVAE CCCCCCCHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHH LEEIEARSPSQDELLAELVAKLDGIKRKRRVVGYIDPLDLRYDTFVPEKIRNSRAVVFCL HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHCCCCEEEEEE MDVSGSMQEREKDLAKRFFLLLHLFLTRGYEHTEIVFVRHTHYAQEVDEETFFYARETGG ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHCHHHEEEECCCCC TIVSTALEKMKEIIDERYPPDEWNIYGAQASDGENFGNDSVRCRKILTEQLLPMCQFYAY HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH VEIVEESAQMLLDNTEAGEDLWQNYRQVKEACRHFEMQRVSEPGHIYPIFREFFLPKVKG HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC >Mature Secondary Structure MEKATVETETIGTRRAGLTTAGTPNNLNLVRTMRNSLGRRIALQRPSTQTQRDLEAQVAE CCCCCCCHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHH LEEIEARSPSQDELLAELVAKLDGIKRKRRVVGYIDPLDLRYDTFVPEKIRNSRAVVFCL HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHCCCCEEEEEE MDVSGSMQEREKDLAKRFFLLLHLFLTRGYEHTEIVFVRHTHYAQEVDEETFFYARETGG ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHCHHHEEEECCCCC TIVSTALEKMKEIIDERYPPDEWNIYGAQASDGENFGNDSVRCRKILTEQLLPMCQFYAY HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH VEIVEESAQMLLDNTEAGEDLWQNYRQVKEACRHFEMQRVSEPGHIYPIFREFFLPKVKG HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]