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The map label for this gene is ycjO [C]

Identifier: 99080271

GI number: 99080271

Start: 442019

End: 442885

Strand: Reverse

Name: ycjO [C]

Synonym: TM1040_0430

Alternate gene names: 99080271

Gene position: 442885-442019 (Counterclockwise)

Preceding gene: 99080272

Following gene: 99080270

Centisome position: 13.84

GC content: 58.13

Gene sequence:

>867_bases
ATGGCAACCCAGCATTCCCGCTCGGCCGCGCGCTTCATGATGGCCCCTGCCGTCATTCTGTTGCTCGGTTGGATGCTTGT
TCCGCTGACAATGACCCTGCTCTTCTCCTTCAAGAAATATCTGCCCCTGCGCGGGGGCGATCTGGGATGGGTCGGTTTTG
ACAATTACGTCCGCTTTGTATCGTCCTCCGCCTTCTGGCCCAGCGTGCAGGCGACGCTGCTGATCGTAGGCGGCGTGCTC
GTGATCACTGTGATCTTTGGCGTATTGCTTGCGCTCCTGCTGGACCAACCCATGTGGGGCCAAGGCATTGTACGTATCCT
TGTTATCGCGCCGTTTTTTGTGATGCCCACCGTGTCGGCGCTGGTTTGGAAGAACATGTTCATGGATCCCGTGAACGGGC
TCTTTGCGCATCTGTGGAAGTTTTTCGGGGCAGAGCCGATCGCGTGGCTCTCCGAAGCCTCGATGCAATCCGTGATCATA
ATCGTCAGCTGGCAATGGCTGCCTTTCGCGACCCTGATCCTCCTGACGGCCATTCAGTCGCTCGACCGCGAACAGCTTGA
AGCGGCAGAGATGGATGGGGCAAGCCCGCTTGCGCGCTTTGGCTACATCATTCTGCCCCACCTCGGCCGGGCGATCACCG
TGGTCGTCCTGATCCAGACGATTTTCCTGCTGTCGATCTTCGCCGAGATCTTTGTAACCACCCAAGGCTCCTTTGGCACC
CGGACCCTGACCTACCTGATCTTCCAGCGTGTGCTGGAGAGCCAGAACGTCGGTCTTGGCTCCGCTGGCGGTGTCTATGC
CATCATCCTTGCCAATATTGTTGCCGCATTCCTGATGCGCATCGTCGGCAAGAACCTCGACGCATAA

Upstream 100 bases:

>100_bases
TCACTCCTCCTGGCCAGGGTTTCGCAACACGCGAGCCTTGGCCCTTTTTCACTCAATTGCAGCCTCGGAAGGGCCCGACC
CGACCGATGAGGAGTCTCAA

Downstream 100 bases:

>100_bases
GGGAGGAGACCCGAAATGGCACGTTCCGTGACCCAACACCGAAAAGCGATCAATACCATCGCCGCCTGGTCGGTTGGCCT
GTTGATCTTCTTCCCGATCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MATQHSRSAARFMMAPAVILLLGWMLVPLTMTLLFSFKKYLPLRGGDLGWVGFDNYVRFVSSSAFWPSVQATLLIVGGVL
VITVIFGVLLALLLDQPMWGQGIVRILVIAPFFVMPTVSALVWKNMFMDPVNGLFAHLWKFFGAEPIAWLSEASMQSVII
IVSWQWLPFATLILLTAIQSLDREQLEAAEMDGASPLARFGYIILPHLGRAITVVVLIQTIFLLSIFAEIFVTTQGSFGT
RTLTYLIFQRVLESQNVGLGSAGGVYAIILANIVAAFLMRIVGKNLDA

Sequences:

>Translated_288_residues
MATQHSRSAARFMMAPAVILLLGWMLVPLTMTLLFSFKKYLPLRGGDLGWVGFDNYVRFVSSSAFWPSVQATLLIVGGVL
VITVIFGVLLALLLDQPMWGQGIVRILVIAPFFVMPTVSALVWKNMFMDPVNGLFAHLWKFFGAEPIAWLSEASMQSVII
IVSWQWLPFATLILLTAIQSLDREQLEAAEMDGASPLARFGYIILPHLGRAITVVVLIQTIFLLSIFAEIFVTTQGSFGT
RTLTYLIFQRVLESQNVGLGSAGGVYAIILANIVAAFLMRIVGKNLDA
>Mature_287_residues
ATQHSRSAARFMMAPAVILLLGWMLVPLTMTLLFSFKKYLPLRGGDLGWVGFDNYVRFVSSSAFWPSVQATLLIVGGVLV
ITVIFGVLLALLLDQPMWGQGIVRILVIAPFFVMPTVSALVWKNMFMDPVNGLFAHLWKFFGAEPIAWLSEASMQSVIII
VSWQWLPFATLILLTAIQSLDREQLEAAEMDGASPLARFGYIILPHLGRAITVVVLIQTIFLLSIFAEIFVTTQGSFGTR
TLTYLIFQRVLESQNVGLGSAGGVYAIILANIVAAFLMRIVGKNLDA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=214, Percent_Identity=29.9065420560748, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789861, Length=291, Percent_Identity=26.1168384879725, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790465, Length=158, Percent_Identity=28.4810126582279, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31729; Mature: 31598

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ATQHSRSAARFMMAPAVILLLGWMLVPLTMTLLFSFKKYLPLRGGDLGWVGFDNYVRFV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
SSSAFWPSVQATLLIVGGVLVITVIFGVLLALLLDQPMWGQGIVRILVIAPFFVMPTVSA
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LVWKNMFMDPVNGLFAHLWKFFGAEPIAWLSEASMQSVIIIVSWQWLPFATLILLTAIQS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHH
LDREQLEAAEMDGASPLARFGYIILPHLGRAITVVVLIQTIFLLSIFAEIFVTTQGSFGT
HCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
RTLTYLIFQRVLESQNVGLGSAGGVYAIILANIVAAFLMRIVGKNLDA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]