| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080235
Identifier: 99080235
GI number: 99080235
Start: 402282
End: 402986
Strand: Reverse
Name: 99080235
Synonym: TM1040_0394
Alternate gene names: NA
Gene position: 402986-402282 (Counterclockwise)
Preceding gene: 99080236
Following gene: 99080234
Centisome position: 12.59
GC content: 64.96
Gene sequence:
>705_bases ATGAGCGAGACGATCACCTTCCCTCCCCTGATGACGGGGGAGGCCGCAGGCCCGGGACAGGATCCCTTTGACCTTGCATG CCAGAAGGCAGAACTCGGTGTCGATGCGGGGCTTGTGGTCTATGAGCTCGGAACAGACGTGCTGCGGGCGGCCCTCGTGC TGGCCCCCGAGGTGCCACTCGCCAAGGCTATGGCGATGCTGCCGGTCTGCGGGGTCGGGTTCCAGAACGCGCTTGGCGCT CTCGCTCCGCCAGAGGTCGCGGTGCATCTGGACTGGAACGGCGCCCTGCGCATCAATGGCGCACGCTGTGGCAGATTGCG GATCGCCGCCAGCACAGATGATCCGGACACGCAACCGGACTGGCTTGTGGTGGGGCTGGACCTGCCGCTCTGGCCTGAAG GCGATGGCGGCGAGACCCCCGACGAAACCGCGCTCTATGCCGAAGGCTGTGCTGATGTTGCTGCACCGCGCCTGCTGGAA AGCTGGGCACGCCATTGCCTGCATTGGATCAACCGATGGGATGAGGGCGAGCTTGAGACGATCCACGGCGAATGGCGCGG CCTTGCGCATGGCATGGGCGAAGCGCGCACCGAAGCCGGGCGCAGCGGCACGTTCCTTGGTGTAGACGAGGATTTCGGAA TGCTTTTGCGGGATGAGACCACCACTCATCTGATCCCGCTCACCACCGTTCTGGTGCAGGACTGA
Upstream 100 bases:
>100_bases CGGCGGATGGCGGCGCACCGATCGTGGTGTCCAAACCTGACAGCGCCCAGGCGCGGGCGTTTCAGGACATCGCGGCAGCC CTCTTGGAGCGTGGCGCCGC
Downstream 100 bases:
>100_bases CAGGAGAGAGACGTGATGAAACTGGCCCGCGCCATCCATTTTGACGAAAGCGACATGAACGTCTTTGCCAGCCCCGCACG GACAGGAGAATGGTGCATCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MSETITFPPLMTGEAAGPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVCGVGFQNALGA LAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALYAEGCADVAAPRLLE SWARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTEAGRSGTFLGVDEDFGMLLRDETTTHLIPLTTVLVQD
Sequences:
>Translated_234_residues MSETITFPPLMTGEAAGPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVCGVGFQNALGA LAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALYAEGCADVAAPRLLE SWARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTEAGRSGTFLGVDEDFGMLLRDETTTHLIPLTTVLVQD >Mature_233_residues SETITFPPLMTGEAAGPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVCGVGFQNALGAL APPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALYAEGCADVAAPRLLES WARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTEAGRSGTFLGVDEDFGMLLRDETTTHLIPLTTVLVQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25029; Mature: 24897
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETITFPPLMTGEAAGPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPL CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCH AKAMAMLPVCGVGFQNALGALAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPD HHHHHHHHHCCCCHHHHHCCCCCCCEEEEECCCCEEEECCCCCCEEEEEECCCCCCCCCC WLVVGLDLPLWPEGDGGETPDETALYAEGCADVAAPRLLESWARHCLHWINRWDEGELET EEEEEECCCCCCCCCCCCCCCCCEEEHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE IHGEWRGLAHGMGEARTEAGRSGTFLGVDEDFGMLLRDETTTHLIPLTTVLVQD ECHHHHHHHHCCCHHHHHCCCCCCEEEECCCCCEEEECCCCCEEEEEEEEEECC >Mature Secondary Structure SETITFPPLMTGEAAGPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCH AKAMAMLPVCGVGFQNALGALAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPD HHHHHHHHHCCCCHHHHHCCCCCCCEEEEECCCCEEEECCCCCCEEEEEECCCCCCCCCC WLVVGLDLPLWPEGDGGETPDETALYAEGCADVAAPRLLESWARHCLHWINRWDEGELET EEEEEECCCCCCCCCCCCCCCCCEEEHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE IHGEWRGLAHGMGEARTEAGRSGTFLGVDEDFGMLLRDETTTHLIPLTTVLVQD ECHHHHHHHHCCCHHHHHCCCCCCEEEECCCCCEEEECCCCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA