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The map label for this gene is yfdE [H]

Identifier: 99080230

GI number: 99080230

Start: 396997

End: 398121

Strand: Direct

Name: yfdE [H]

Synonym: TM1040_0389

Alternate gene names: 99080230

Gene position: 396997-398121 (Clockwise)

Preceding gene: 99080213

Following gene: 99080232

Centisome position: 12.4

GC content: 60.98

Gene sequence:

>1125_bases
ATGACACCGCTTCATGGCCTCAAGGTTGTTGAACTCGCCCGCATTCTGGCTGGTCCCTGGATTGGTCAGGCGCTCGCGGA
TCTGGGCGCCGAAGTGGTCAAGGTCGAAAGCCCCGAGGGTGATGACACCCGCCGCTGGGGGCCGCCCTTTGTGGAGCGGG
AGGGTGACAAAACGGCCGCCTACTATTATGCCGCCAACCGGGGCAAGACCTGTGTCACGGCTGATTTTCGCACATCAGAG
GGGCAGGCCCAGGTGCGCGATCTGGTCCGCGATGCCGACATTCTGATCGAGAATTTCAAAGTGGGCGGGCTGAAGAAATA
TGGCCTGGATTTCGAGAGCCTCTCCGCTCTCAATCCGCGTCTGATCTATTGCTCTGTCACCGGATTTGGTCAGGATGGTC
CCTATGCGACGCGCGCGGGGTATGACTTCTTGCTGCAGGGCATGTCGGGGCTGATGTCGATCACCGGGGCCGCCGATGGG
GAGCCGCAAAAGGTTGGCGTGGCGATCACGGATGTGGTGACGGGGCTTTATGGCAGCATCGGTATTCTGGCAGCGGTGGA
GCAGCGGCACCGCACCGGGCGGGGGCAGCATATCGATATGTCCTTGCTCGATTGCGCCACAGCGATGTTGGCCAATCAGA
ACATGAACTATCTGGTAACCGGGGAAAGCCCCACCCGAATGGGCAATGAACATCCCAATATCGCACCCTATCAGGTGATG
GCGGTGCGCGATGGTCATGTCATTCTTGCGGTTGGCAATGATGGTCAGTTCACCCGACTGTGCGATGTGCTTAACCTTGC
AGGGCTCAAGGATGATCCGCGCTTTTCCACCAACCAGCTGCGGGTGGCGCACCGTGCAGATTTGACGCCGCTGCTGGCGG
CGGCGCTTGCACAGTGGAGCCAGTCGGATTTGCTGGCTGCGCTTGAGGCCGCGACCGTTCCGGCTGGGCCGATCAACACC
ATCGGGCAGGCTTTTGAGGATGCGCAGATCAAACATCGTCAGATGCAGATTGCGCCCGAGGGCGTGCCAGGCGTGCGGGG
GCCTTGGGTATTTTCTGACGCGGACCTGGCGCTTGACCGCTCGGCCCCCGTCCTGCCGCGCGACACGAAGCCCGAGAAAG
ATTAA

Upstream 100 bases:

>100_bases
GGGTCCGGGGGCGGGGGCGAAGCGAAGGATGCTTGGCCTTTGAGAGCGCGGTCCGCTATGCAGGGAGCCAAAGTGATTAA
CGTGCAAAGGAAGTCGCCGC

Downstream 100 bases:

>100_bases
CTGGGTGCCAAGAGGTCCGATACGATACTGAGCGGCGAGTCATCTCCGAGGAGGCGCCGCACTTTGGGGTCAAGGCGCGG
GCTGTCCTTGGCCAGGGTGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MTPLHGLKVVELARILAGPWIGQALADLGAEVVKVESPEGDDTRRWGPPFVEREGDKTAAYYYAANRGKTCVTADFRTSE
GQAQVRDLVRDADILIENFKVGGLKKYGLDFESLSALNPRLIYCSVTGFGQDGPYATRAGYDFLLQGMSGLMSITGAADG
EPQKVGVAITDVVTGLYGSIGILAAVEQRHRTGRGQHIDMSLLDCATAMLANQNMNYLVTGESPTRMGNEHPNIAPYQVM
AVRDGHVILAVGNDGQFTRLCDVLNLAGLKDDPRFSTNQLRVAHRADLTPLLAAALAQWSQSDLLAALEAATVPAGPINT
IGQAFEDAQIKHRQMQIAPEGVPGVRGPWVFSDADLALDRSAPVLPRDTKPEKD

Sequences:

>Translated_374_residues
MTPLHGLKVVELARILAGPWIGQALADLGAEVVKVESPEGDDTRRWGPPFVEREGDKTAAYYYAANRGKTCVTADFRTSE
GQAQVRDLVRDADILIENFKVGGLKKYGLDFESLSALNPRLIYCSVTGFGQDGPYATRAGYDFLLQGMSGLMSITGAADG
EPQKVGVAITDVVTGLYGSIGILAAVEQRHRTGRGQHIDMSLLDCATAMLANQNMNYLVTGESPTRMGNEHPNIAPYQVM
AVRDGHVILAVGNDGQFTRLCDVLNLAGLKDDPRFSTNQLRVAHRADLTPLLAAALAQWSQSDLLAALEAATVPAGPINT
IGQAFEDAQIKHRQMQIAPEGVPGVRGPWVFSDADLALDRSAPVLPRDTKPEKD
>Mature_373_residues
TPLHGLKVVELARILAGPWIGQALADLGAEVVKVESPEGDDTRRWGPPFVEREGDKTAAYYYAANRGKTCVTADFRTSEG
QAQVRDLVRDADILIENFKVGGLKKYGLDFESLSALNPRLIYCSVTGFGQDGPYATRAGYDFLLQGMSGLMSITGAADGE
PQKVGVAITDVVTGLYGSIGILAAVEQRHRTGRGQHIDMSLLDCATAMLANQNMNYLVTGESPTRMGNEHPNIAPYQVMA
VRDGHVILAVGNDGQFTRLCDVLNLAGLKDDPRFSTNQLRVAHRADLTPLLAAALAQWSQSDLLAALEAATVPAGPINTI
GQAFEDAQIKHRQMQIAPEGVPGVRGPWVFSDADLALDRSAPVLPRDTKPEKD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=375, Percent_Identity=38.9333333333333, Blast_Score=287, Evalue=1e-77,
Organism=Homo sapiens, GI300863124, Length=330, Percent_Identity=40.6060606060606, Blast_Score=278, Evalue=4e-75,
Organism=Homo sapiens, GI13376042, Length=330, Percent_Identity=37.5757575757576, Blast_Score=239, Evalue=3e-63,
Organism=Homo sapiens, GI300863126, Length=375, Percent_Identity=33.6, Blast_Score=223, Evalue=2e-58,
Organism=Homo sapiens, GI266456254, Length=342, Percent_Identity=29.2397660818713, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI42794625, Length=342, Percent_Identity=29.2397660818713, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI266458397, Length=211, Percent_Identity=34.5971563981043, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI266458393, Length=262, Percent_Identity=32.824427480916, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI266458395, Length=168, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI42822893, Length=168, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI87082093, Length=341, Percent_Identity=37.5366568914956, Blast_Score=251, Evalue=6e-68,
Organism=Escherichia coli, GI1788717, Length=355, Percent_Identity=27.887323943662, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1786222, Length=312, Percent_Identity=26.6025641025641, Blast_Score=92, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=335, Percent_Identity=28.955223880597, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=206, Percent_Identity=32.0388349514563, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24648431, Length=373, Percent_Identity=43.1635388739946, Blast_Score=301, Evalue=5e-82,
Organism=Drosophila melanogaster, GI24585488, Length=373, Percent_Identity=26.8096514745308, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40237; Mature: 40106

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLHGLKVVELARILAGPWIGQALADLGAEVVKVESPEGDDTRRWGPPFVEREGDKTAA
CCCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEE
YYYAANRGKTCVTADFRTSEGQAQVRDLVRDADILIENFKVGGLKKYGLDFESLSALNPR
EEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHCCCCE
LIYCSVTGFGQDGPYATRAGYDFLLQGMSGLMSITGAADGEPQKVGVAITDVVTGLYGSI
EEEEEEECCCCCCCCCHHCCHHHHHHHHHHHHEECCCCCCCCCEECEEHHHHHHHHHHHH
GILAAVEQRHRTGRGQHIDMSLLDCATAMLANQNMNYLVTGESPTRMGNEHPNIAPYQVM
HHHHHHHHHHHCCCCCEECHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEE
AVRDGHVILAVGNDGQFTRLCDVLNLAGLKDDPRFSTNQLRVAHRADLTPLLAAALAQWS
EEECCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEHHHCCCHHHHHHHHHHCC
QSDLLAALEAATVPAGPINTIGQAFEDAQIKHRQMQIAPEGVPGVRGPWVFSDADLALDR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEECCCCCEECC
SAPVLPRDTKPEKD
CCCCCCCCCCCCCC
>Mature Secondary Structure 
TPLHGLKVVELARILAGPWIGQALADLGAEVVKVESPEGDDTRRWGPPFVEREGDKTAA
CCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEE
YYYAANRGKTCVTADFRTSEGQAQVRDLVRDADILIENFKVGGLKKYGLDFESLSALNPR
EEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHCCCCE
LIYCSVTGFGQDGPYATRAGYDFLLQGMSGLMSITGAADGEPQKVGVAITDVVTGLYGSI
EEEEEEECCCCCCCCCHHCCHHHHHHHHHHHHEECCCCCCCCCEECEEHHHHHHHHHHHH
GILAAVEQRHRTGRGQHIDMSLLDCATAMLANQNMNYLVTGESPTRMGNEHPNIAPYQVM
HHHHHHHHHHHCCCCCEECHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEE
AVRDGHVILAVGNDGQFTRLCDVLNLAGLKDDPRFSTNQLRVAHRADLTPLLAAALAQWS
EEECCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEHHHCCCHHHHHHHHHHCC
QSDLLAALEAATVPAGPINTIGQAFEDAQIKHRQMQIAPEGVPGVRGPWVFSDADLALDR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEECCCCCEECC
SAPVLPRDTKPEKD
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]