Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99080224

Identifier: 99080224

GI number: 99080224

Start: 392070

End: 392297

Strand: Reverse

Name: 99080224

Synonym: TM1040_0383

Alternate gene names: NA

Gene position: 392297-392070 (Counterclockwise)

Preceding gene: 99080225

Following gene: 99080223

Centisome position: 12.26

GC content: 57.89

Gene sequence:

>228_bases
ATGGCATACGCATCGAACGCACAAACCAGCACCCCCTTCAATCCGTTCGGCCTGATCGCAGGCTTTTTCCGCGCGATTGG
CAATGGTCTGGTGCATCTCGCAGAATCCAACCACCGCGTGAACCGCGCCCGCACCCTGATGGAGCTGTCGGACGAAGAAC
TGGCACAGCGCGGCCTGAAACGCGAAGACGTTGTAAAGCACGTCTTCTCGGACATCATGTACGTCTGA

Upstream 100 bases:

>100_bases
GCGCATGCCGGGAATGCGTCAGAAGTGCTAACCTATTTGCTGCGATGCGGCTATGTTGAAGCCACGGGAGAGACAGTCTT
GAACACAGGAGCACGTCCCC

Downstream 100 bases:

>100_bases
CGACCCGCGCATCGCGCATCAAAAACCTGACCAGCGCGGGGGGCCGATCATGAGCGCCCCCCGGCTGATTGCCCGGCACT
ATCACGGGCACCCCCATGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 74

Protein sequence:

>75_residues
MAYASNAQTSTPFNPFGLIAGFFRAIGNGLVHLAESNHRVNRARTLMELSDEELAQRGLKREDVVKHVFSDIMYV

Sequences:

>Translated_75_residues
MAYASNAQTSTPFNPFGLIAGFFRAIGNGLVHLAESNHRVNRARTLMELSDEELAQRGLKREDVVKHVFSDIMYV
>Mature_74_residues
AYASNAQTSTPFNPFGLIAGFFRAIGNGLVHLAESNHRVNRARTLMELSDEELAQRGLKREDVVKHVFSDIMYV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8410; Mature: 8278

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYASNAQTSTPFNPFGLIAGFFRAIGNGLVHLAESNHRVNRARTLMELSDEELAQRGLK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCC
REDVVKHVFSDIMYV
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
AYASNAQTSTPFNPFGLIAGFFRAIGNGLVHLAESNHRVNRARTLMELSDEELAQRGLK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCC
REDVVKHVFSDIMYV
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA