| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is rbsA2 [H]
Identifier: 99080211
GI number: 99080211
Start: 380238
End: 381017
Strand: Direct
Name: rbsA2 [H]
Synonym: TM1040_0370
Alternate gene names: 99080211
Gene position: 380238-381017 (Clockwise)
Preceding gene: 99080210
Following gene: 99080212
Centisome position: 11.88
GC content: 61.15
Gene sequence:
>780_bases ATGATGGAACCCATTCTCAAAGGCCGCAATCTCGTCAAACGCTACGGGAAGGTCACGGCGCTCGATCATTGTGACTTCGA CCTGATGCCGGGGGAGATTCTCGCGGTGATCGGAGACAATGGCGCGGGCAAGTCCACGCTGATCAAGGCGCTCTCGGGCG CGGTGATCCCGGACGAGGGCACGGTGGAGCTGGAAGGCAAACCGGTGAATTTCCATTCGCCGATCGATGCGCGCGAGTCC GGGATCGAGACCGTCTATCAGACCCTCGCGATGTCGCCTGCGCTCTCGATTGCCGACAATATGTTCATGGGGCGCGAGCT GCGCAAACCCGGCTGGCGCGGGCAACTCCTGCGGCAACTGGACCGCAGCCGGATGGAGGAGATTGCCCGCCAAAAGCTCA ATGATCTGGGGTTGATGACAATCCAGAACATCAATCAGGCGGTGGAAACCCTGTCGGGCGGCCAGCGCCAGGGCGTTGCT GTGGCGCGGGCGGCGGCCTTTGGATCGAAGGTGATCATCCTGGACGAGCCCACGGCCGCGCTTGGGGTGAAGGAAAGCCG CCGCGTGCTGGAGCTGATCCAAGACGTGAAGTCGCGGGGTATTCCGATCATCCTCATCAGCCACAATATGCCACATGTGT TTGAGGTCGCGGATCGTATCCATGTGCATCGTCTGGGGCGCAGGCTCTGTGTGATAGATCCCAAAGAGCACGAAATGGCC GATGCGGTGGCCTATATGACCGGCGCAAAGGAGCCTGATGCGGAGCTGTCGGCGGCATGA
Upstream 100 bases:
>100_bases TTCGACTGCTCGGGGCAGATGCACAGTGGACCTATCTCCTCATCGGTGTGCTTATCATCGCCGCCGTGGCCGTGGACCAG TGGATCAGAAAGGTGTCGGT
Downstream 100 bases:
>100_bases CCCTCGCGGCGCTCTGCCAAGGCGTTCTGGAGCGGCTCGACCCTCGCCAGCCGGGACGACAGTTGGTGGCTCTCTCCGGG GCGCCCGGAAGCGGCAAGTC
Product: ABC transporter related
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MMEPILKGRNLVKRYGKVTALDHCDFDLMPGEILAVIGDNGAGKSTLIKALSGAVIPDEGTVELEGKPVNFHSPIDARES GIETVYQTLAMSPALSIADNMFMGRELRKPGWRGQLLRQLDRSRMEEIARQKLNDLGLMTIQNINQAVETLSGGQRQGVA VARAAAFGSKVIILDEPTAALGVKESRRVLELIQDVKSRGIPIILISHNMPHVFEVADRIHVHRLGRRLCVIDPKEHEMA DAVAYMTGAKEPDAELSAA
Sequences:
>Translated_259_residues MMEPILKGRNLVKRYGKVTALDHCDFDLMPGEILAVIGDNGAGKSTLIKALSGAVIPDEGTVELEGKPVNFHSPIDARES GIETVYQTLAMSPALSIADNMFMGRELRKPGWRGQLLRQLDRSRMEEIARQKLNDLGLMTIQNINQAVETLSGGQRQGVA VARAAAFGSKVIILDEPTAALGVKESRRVLELIQDVKSRGIPIILISHNMPHVFEVADRIHVHRLGRRLCVIDPKEHEMA DAVAYMTGAKEPDAELSAA >Mature_259_residues MMEPILKGRNLVKRYGKVTALDHCDFDLMPGEILAVIGDNGAGKSTLIKALSGAVIPDEGTVELEGKPVNFHSPIDARES GIETVYQTLAMSPALSIADNMFMGRELRKPGWRGQLLRQLDRSRMEEIARQKLNDLGLMTIQNINQAVETLSGGQRQGVA VARAAAFGSKVIILDEPTAALGVKESRRVLELIQDVKSRGIPIILISHNMPHVFEVADRIHVHRLGRRLCVIDPKEHEMA DAVAYMTGAKEPDAELSAA
Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]
COG id: COG1129
COG function: function code G; ABC-type sugar transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=225, Percent_Identity=31.5555555555556, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI105990541, Length=235, Percent_Identity=30.2127659574468, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI27881501, Length=251, Percent_Identity=25.4980079681275, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI30795238, Length=251, Percent_Identity=25.4980079681275, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI153792144, Length=215, Percent_Identity=27.906976744186, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI150417984, Length=235, Percent_Identity=29.3617021276596, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI116734710, Length=230, Percent_Identity=29.1304347826087, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI47078218, Length=223, Percent_Identity=26.9058295964126, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI45446740, Length=223, Percent_Identity=26.9058295964126, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI31657092, Length=203, Percent_Identity=25.1231527093596, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI27436953, Length=227, Percent_Identity=25.1101321585903, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI27477115, Length=201, Percent_Identity=28.3582089552239, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI21536378, Length=236, Percent_Identity=30.9322033898305, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI9665248, Length=206, Percent_Identity=29.6116504854369, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI27262624, Length=225, Percent_Identity=27.1111111111111, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI27262626, Length=225, Percent_Identity=27.1111111111111, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI42741659, Length=214, Percent_Identity=27.1028037383178, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI9961252, Length=207, Percent_Identity=27.0531400966184, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI4505771, Length=207, Percent_Identity=27.0531400966184, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI9961250, Length=207, Percent_Identity=27.0531400966184, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI48995001, Length=246, Percent_Identity=38.2113821138211, Blast_Score=161, Evalue=4e-41, Organism=Escherichia coli, GI1790190, Length=226, Percent_Identity=36.7256637168142, Blast_Score=142, Evalue=2e-35, Organism=Escherichia coli, GI1788472, Length=257, Percent_Identity=33.0739299610895, Blast_Score=137, Evalue=5e-34, Organism=Escherichia coli, GI1788210, Length=224, Percent_Identity=33.4821428571429, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=35.8744394618834, Blast_Score=127, Evalue=5e-31, Organism=Escherichia coli, GI1788897, Length=220, Percent_Identity=35.4545454545455, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1790525, Length=230, Percent_Identity=31.7391304347826, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1789991, Length=259, Percent_Identity=31.2741312741313, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1790544, Length=227, Percent_Identity=31.2775330396476, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI87081791, Length=237, Percent_Identity=31.2236286919831, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787712, Length=240, Percent_Identity=29.1666666666667, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=30, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789864, Length=248, Percent_Identity=27.0161290322581, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87081709, Length=240, Percent_Identity=28.3333333333333, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1789962, Length=244, Percent_Identity=31.5573770491803, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI145693107, Length=272, Percent_Identity=29.7794117647059, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790534, Length=224, Percent_Identity=31.6964285714286, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790162, Length=226, Percent_Identity=30.5309734513274, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=30.0884955752212, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787758, Length=241, Percent_Identity=29.045643153527, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1786803, Length=247, Percent_Identity=27.5303643724696, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1788225, Length=218, Percent_Identity=28.8990825688073, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1787500, Length=214, Percent_Identity=31.7757009345794, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=26.9230769230769, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1790467, Length=237, Percent_Identity=29.957805907173, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=25, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786872, Length=213, Percent_Identity=30.5164319248826, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI48994943, Length=237, Percent_Identity=29.957805907173, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1789672, Length=212, Percent_Identity=25.9433962264151, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788761, Length=216, Percent_Identity=28.2407407407407, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790739, Length=235, Percent_Identity=28.0851063829787, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI87081782, Length=261, Percent_Identity=26.4367816091954, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786345, Length=232, Percent_Identity=29.3103448275862, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1787089, Length=246, Percent_Identity=27.2357723577236, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788165, Length=220, Percent_Identity=27.7272727272727, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI87081834, Length=222, Percent_Identity=27.4774774774775, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87082267, Length=220, Percent_Identity=29.5454545454545, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1787105, Length=266, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789032, Length=240, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786698, Length=211, Percent_Identity=27.9620853080569, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786253, Length=191, Percent_Identity=28.7958115183246, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082268, Length=215, Percent_Identity=24.1860465116279, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787547, Length=236, Percent_Identity=27.1186440677966, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789593, Length=237, Percent_Identity=28.2700421940928, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788506, Length=230, Percent_Identity=27.8260869565217, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994883, Length=227, Percent_Identity=26.8722466960352, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=28.7081339712919, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1788002, Length=209, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786319, Length=210, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI2367384, Length=191, Percent_Identity=30.3664921465969, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787759, Length=246, Percent_Identity=29.2682926829268, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1786703, Length=216, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787143, Length=223, Percent_Identity=29.5964125560538, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787112, Length=192, Percent_Identity=28.125, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789873, Length=199, Percent_Identity=27.1356783919598, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787972, Length=209, Percent_Identity=27.2727272727273, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786981, Length=208, Percent_Identity=29.3269230769231, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115533608, Length=224, Percent_Identity=28.125, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17565586, Length=221, Percent_Identity=26.2443438914027, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534520, Length=224, Percent_Identity=29.0178571428571, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71992290, Length=210, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17511077, Length=219, Percent_Identity=28.7671232876712, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17569145, Length=204, Percent_Identity=30.3921568627451, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=218, Percent_Identity=25.6880733944954, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567265, Length=228, Percent_Identity=27.1929824561404, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193209708, Length=214, Percent_Identity=30.8411214953271, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17541710, Length=242, Percent_Identity=30.5785123966942, Blast_Score=64, Evalue=1e-10, Organism=Drosophila melanogaster, GI24643674, Length=231, Percent_Identity=24.2424242424242, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24666092, Length=224, Percent_Identity=28.125, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI221512771, Length=221, Percent_Identity=28.5067873303167, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI116007328, Length=228, Percent_Identity=27.1929824561404, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28574150, Length=228, Percent_Identity=27.1929824561404, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28574533, Length=208, Percent_Identity=31.7307692307692, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI17136592, Length=237, Percent_Identity=29.535864978903, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI17136662, Length=228, Percent_Identity=28.5087719298246, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI116007184, Length=220, Percent_Identity=26.8181818181818, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI221500365, Length=220, Percent_Identity=26.8181818181818, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24653245, Length=235, Percent_Identity=31.4893617021277, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24659289, Length=222, Percent_Identity=28.8288288288288, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI281363262, Length=235, Percent_Identity=31.4893617021277, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI28571209, Length=227, Percent_Identity=27.3127753303965, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI28574744, Length=202, Percent_Identity=27.2277227722772, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 28318; Mature: 28318
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMEPILKGRNLVKRYGKVTALDHCDFDLMPGEILAVIGDNGAGKSTLIKALSGAVIPDEG CCCHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC TVELEGKPVNFHSPIDARESGIETVYQTLAMSPALSIADNMFMGRELRKPGWRGQLLRQL EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH DRSRMEEIARQKLNDLGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIILDEPTAA HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCCHH LGVKESRRVLELIQDVKSRGIPIILISHNMPHVFEVADRIHVHRLGRRLCVIDPKEHEMA HCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHH DAVAYMTGAKEPDAELSAA HHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MMEPILKGRNLVKRYGKVTALDHCDFDLMPGEILAVIGDNGAGKSTLIKALSGAVIPDEG CCCHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC TVELEGKPVNFHSPIDARESGIETVYQTLAMSPALSIADNMFMGRELRKPGWRGQLLRQL EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH DRSRMEEIARQKLNDLGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIILDEPTAA HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCCHH LGVKESRRVLELIQDVKSRGIPIILISHNMPHVFEVADRIHVHRLGRRLCVIDPKEHEMA HCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHH DAVAYMTGAKEPDAELSAA HHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA