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The map label for this gene is ycfQ [H]

Identifier: 99080160

GI number: 99080160

Start: 324863

End: 325447

Strand: Direct

Name: ycfQ [H]

Synonym: TM1040_0319

Alternate gene names: 99080160

Gene position: 324863-325447 (Clockwise)

Preceding gene: 99080159

Following gene: 99080161

Centisome position: 10.15

GC content: 64.1

Gene sequence:

>585_bases
ATGACACGCACCGGACGCCCCAGATCCTTTGACGAAGACACCGCACTCCAGGCGGCGATGACCGCGTTTTGGGAAGGCGG
GTACACTGGCACCACCTATCGCGACCTCGAACAAGCCACCGGCCTTCGGCGGCAAAGCCTGACCTACGCGTTTGGTGAAA
AGCCCGATTTGTTCCGGCGTGCGCTGGCGCTTTATATCGACCAAAGGGTGCGCAAGGCCTGCGCGTTGCTCGCCCAAGAT
GCGCCGTTCAGGGACAATCTGAGTGCGCTGCTGAACGCCTGGGAGGCGGATGCGTCTTCTGGCAATGGCCGCGGGTGCCT
GTTGGTGCGCGCCACCGCCGAGGTTGGGCTTGATCCGCATATGACCTCGGAAATACGCCGGGGTGACACCCTGTTGTTGC
AGGCGCTCACGCAGGCCTTTGACCGCGCACAACTGGCGGGCGAGATACCCTCTGCCGCGCCCCCAGAGGCATTGGCCCGG
TTGGTGATCTCGGTCGGCAATGGCGCCATGACGCAGGCCGTGGCCCGCCAAGATCCGGAGGTATCCCGTGCCGCGCATGA
CGCGCTGCTCTCACTTTTGACCTAG

Upstream 100 bases:

>100_bases
CGCTGCGTTCTATCCCCCCGTGGGCGCCCCAAAAACGATTGTGCACAGACAATTCATCCGGGGGCTTGAAGGTTTATGAA
CGCGTGTCCATATACGCGTC

Downstream 100 bases:

>100_bases
GCCCTGATAGATCCGCCTGACGCCTTCGGGTCCCGGTCCATTCATTGCGGACAATTTATGTTCGCTTGTCCATAATCTAT
CGAGTGCCGGCCTCGATGGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MTRTGRPRSFDEDTALQAAMTAFWEGGYTGTTYRDLEQATGLRRQSLTYAFGEKPDLFRRALALYIDQRVRKACALLAQD
APFRDNLSALLNAWEADASSGNGRGCLLVRATAEVGLDPHMTSEIRRGDTLLLQALTQAFDRAQLAGEIPSAAPPEALAR
LVISVGNGAMTQAVARQDPEVSRAAHDALLSLLT

Sequences:

>Translated_194_residues
MTRTGRPRSFDEDTALQAAMTAFWEGGYTGTTYRDLEQATGLRRQSLTYAFGEKPDLFRRALALYIDQRVRKACALLAQD
APFRDNLSALLNAWEADASSGNGRGCLLVRATAEVGLDPHMTSEIRRGDTLLLQALTQAFDRAQLAGEIPSAAPPEALAR
LVISVGNGAMTQAVARQDPEVSRAAHDALLSLLT
>Mature_193_residues
TRTGRPRSFDEDTALQAAMTAFWEGGYTGTTYRDLEQATGLRRQSLTYAFGEKPDLFRRALALYIDQRVRKACALLAQDA
PFRDNLSALLNAWEADASSGNGRGCLLVRATAEVGLDPHMTSEIRRGDTLLLQALTQAFDRAQLAGEIPSAAPPEALARL
VISVGNGAMTQAVARQDPEVSRAAHDALLSLLT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=170, Percent_Identity=28.8235294117647, Blast_Score=70, Evalue=7e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21007; Mature: 20876

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTGRPRSFDEDTALQAAMTAFWEGGYTGTTYRDLEQATGLRRQSLTYAFGEKPDLFRR
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHH
ALALYIDQRVRKACALLAQDAPFRDNLSALLNAWEADASSGNGRGCLLVRATAEVGLDPH
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHCCCCCH
MTSEIRRGDTLLLQALTQAFDRAQLAGEIPSAAPPEALARLVISVGNGAMTQAVARQDPE
HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH
VSRAAHDALLSLLT
HHHHHHHHHHHHHC
>Mature Secondary Structure 
TRTGRPRSFDEDTALQAAMTAFWEGGYTGTTYRDLEQATGLRRQSLTYAFGEKPDLFRR
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHH
ALALYIDQRVRKACALLAQDAPFRDNLSALLNAWEADASSGNGRGCLLVRATAEVGLDPH
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHCCCCCH
MTSEIRRGDTLLLQALTQAFDRAQLAGEIPSAAPPEALARLVISVGNGAMTQAVARQDPE
HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH
VSRAAHDALLSLLT
HHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]