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The map label for this gene is rnpA [H]

Identifier: 99080153

GI number: 99080153

Start: 317986

End: 318423

Strand: Reverse

Name: rnpA [H]

Synonym: TM1040_0312

Alternate gene names: 99080153

Gene position: 318423-317986 (Counterclockwise)

Preceding gene: 99080154

Following gene: 99080152

Centisome position: 9.95

GC content: 63.24

Gene sequence:

>438_bases
ATGGCAAGCACCGCTGACCAAGGGATACAGCCTCCGGCGGTGTCCGTTTGTGCATCATCTCCCCAAGAGGCCCAAGCTGC
GGCCAAGCCCGTAAAAACGCGGGCGGGGATGGTTTTGCTGACCAAACGCGGCGAATTCCTCGCTGCGGCTCGGGCGCGCA
AGCAAGGCACGCGCTCGATGATGGTGCAGGGCCGCAAACGCGGCGATGAGGGTTCCCTTCGGGTCGGGTTTACCTGCTCC
AAGAAGGTGGGCAATGCGGTGACGCGGAACCGTGCCAAGCGCCGCCTGCGCGAGATCGCGCGGCTCCTGCTCAAGGAGCA
TGGCAAACCGGGTTGGGACTATGTGCTCATCGGGCGCGCGGGTGAGACAACGACCTGCCCCTTTGAGCAGATGCAAAAAG
ACTTCCTCTACGCGCTGCGCAAGCTACACGGATCCTGA

Upstream 100 bases:

>100_bases
ATCCTGAACGCACGCCGCGCACGCGGTCGTAAGTCCCTGAGCGCATAAGTTTCGCACTCAGACGACAGTTCTGACGGACA
TGACACCGCCGGAGGCTCCC

Downstream 100 bases:

>100_bases
CAGCACGAATCGTGACAGGCGCAAGGGTACGCGGGCGGGCAGACCGGCGGGCCGCTCAGACGTCTGTCCACGGGGGCTCC
CGCCCGTGTCAGGTGCAATA

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MASTADQGIQPPAVSVCASSPQEAQAAAKPVKTRAGMVLLTKRGEFLAAARARKQGTRSMMVQGRKRGDEGSLRVGFTCS
KKVGNAVTRNRAKRRLREIARLLLKEHGKPGWDYVLIGRAGETTTCPFEQMQKDFLYALRKLHGS

Sequences:

>Translated_145_residues
MASTADQGIQPPAVSVCASSPQEAQAAAKPVKTRAGMVLLTKRGEFLAAARARKQGTRSMMVQGRKRGDEGSLRVGFTCS
KKVGNAVTRNRAKRRLREIARLLLKEHGKPGWDYVLIGRAGETTTCPFEQMQKDFLYALRKLHGS
>Mature_144_residues
ASTADQGIQPPAVSVCASSPQEAQAAAKPVKTRAGMVLLTKRGEFLAAARARKQGTRSMMVQGRKRGDEGSLRVGFTCSK
KVGNAVTRNRAKRRLREIARLLLKEHGKPGWDYVLIGRAGETTTCPFEQMQKDFLYALRKLHGS

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 15871; Mature: 15739

Theoretical pI: Translated: 11.45; Mature: 11.45

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTADQGIQPPAVSVCASSPQEAQAAAKPVKTRAGMVLLTKRGEFLAAARARKQGTRSM
CCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCHHHH
MVQGRKRGDEGSLRVGFTCSKKVGNAVTRNRAKRRLREIARLLLKEHGKPGWDYVLIGRA
HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
GETTTCPFEQMQKDFLYALRKLHGS
CCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASTADQGIQPPAVSVCASSPQEAQAAAKPVKTRAGMVLLTKRGEFLAAARARKQGTRSM
CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCHHHH
MVQGRKRGDEGSLRVGFTCSKKVGNAVTRNRAKRRLREIARLLLKEHGKPGWDYVLIGRA
HHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
GETTTCPFEQMQKDFLYALRKLHGS
CCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA