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The map label for this gene is rarA [H]

Identifier: 99080129

GI number: 99080129

Start: 294157

End: 295488

Strand: Direct

Name: rarA [H]

Synonym: TM1040_0288

Alternate gene names: 99080129

Gene position: 294157-295488 (Clockwise)

Preceding gene: 99080128

Following gene: 99080131

Centisome position: 9.19

GC content: 64.86

Gene sequence:

>1332_bases
ATGGCGGATCTCTTTGACAGCGAGGAGGCGGGCGCTCGGGCGGCGCAGAACGGGGCCAGTGATGCCCCGCGCCCGCTCGC
GGACCGGTTGCGGCCCCGAACCCTTGCAGAGGTGATCGGGCAGGACCAGGTGCTGGGTGCAGAGGCGCCTTTGGGGGTGA
TGCTCAGCTCGGGGAGCCTCTCGTCGCTCATTTTCTGGGGGCCGCCGGGTGTCGGGAAGACCACCATCGCGCGGCTCCTG
GCGCAGGAGACGGATCTGCATTTTGTGCAGATCTCGGCGATCTTTACCGGTGTACCGGATCTGAAGAAAGTGTTCGAGGC
CGCCAAGATCCGGCGCCAGAACGGGCAGGGCACGCTCTTGTTCGTGGATGAGATCCACCGTTTCAACAAGGCCCAGCAGG
ACGGGTTCCTGCCGCATATGGAGGATGGCACCATCCTTCTGGTGGGGGCCACCACGGAGAACCCGAGCTTTGAACTCAAT
GCCGCGGTGTTGTCGCGCGCGCAGGTTCTGGTTCTGGAGCGCCTGAGCCTTGCGGATCTGGAGCGGCTGACGCAGCGCGC
GGAACAGGCGCTGGAGCGCCGCTTGCCGCTGTCGCCCGAGGCGCGCGATGCGCTGCATCAGATGGCCGATGGCGACGGGC
GGGCGCTCTTGAATTTGATCGAGCAGGTCTCGGCCTGGAAGGTCGACCAGCCCCTGGGCCGCGAGGCGCTGGCGACGCGG
CTGATGCGGCGGGCGGCGAAATACGACAAATCCGGCGATGAGCATTATAACCTCATCTCGGCGCTGCATAAATCGGTGCG
CGGTTCGGACCCGGATGCGGCCCTTTATTGGTTTGCGCGGATGCTGGAGGGCGGCGAGGACCCCAAATACCTCGCCCGGC
GCCTGACCCGGATGGCGGTGGAGGATATTGCGCTCGCGGATCCGCAGGCGCAGGCGATCTGCCTTCAGGCCTGGGAGGCC
TATGAGCGGCTAGGCTCGCCCGAGGGCGAGTTGGCGCTGGCGCAGGCGGTGATCTACCTCGCGCTCGCGCCCAAGACCAA
CGCGGGCTACATGGCCTATAAGGCGGCGCGGCGTCTGGCCAAGGAGACCGGGTCGATGTCGCCACCCAAACATATCCTCA
ATGCGCCGACCAAGCTGATGGCGGAGCAGGGCTATGGCAAGGGCTATGACTACGACCATGATGCCGAGGATGGGTTTTCG
GGGCAGAATTATTTTCCCGACGGGGTCAAACGCCCTGTGCTTTATCAGCCGGTGGAGCGCGGGTTTGAGCGCGAACTGCG
CAAGCGCACGGAATTCTTTGCCAAGAAACGCATCCAGCGCCAAGGAGAGTAA

Upstream 100 bases:

>100_bases
CCCGAAGATGTAGCAAATCTCCTGATGAGCAGTGACCGCTGGATGCGGATGGACCTGATGCGTCAGGGCCAGCGCGTGTC
TCTGCGGTTCCGGCTCTGAC

Downstream 100 bases:

>100_bases
ATCAGGTTTTGCGGACAAAACCTGAAGGCCTCCGGCGGGGATATTTTCTGTTAGAAGAAAGGGCGGCGTCAGGCTGTGAC
GCGCACCCATGTGCCCATGC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MADLFDSEEAGARAAQNGASDAPRPLADRLRPRTLAEVIGQDQVLGAEAPLGVMLSSGSLSSLIFWGPPGVGKTTIARLL
AQETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELN
AAVLSRAQVLVLERLSLADLERLTQRAEQALERRLPLSPEARDALHQMADGDGRALLNLIEQVSAWKVDQPLGREALATR
LMRRAAKYDKSGDEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPKYLARRLTRMAVEDIALADPQAQAICLQAWEA
YERLGSPEGELALAQAVIYLALAPKTNAGYMAYKAARRLAKETGSMSPPKHILNAPTKLMAEQGYGKGYDYDHDAEDGFS
GQNYFPDGVKRPVLYQPVERGFERELRKRTEFFAKKRIQRQGE

Sequences:

>Translated_443_residues
MADLFDSEEAGARAAQNGASDAPRPLADRLRPRTLAEVIGQDQVLGAEAPLGVMLSSGSLSSLIFWGPPGVGKTTIARLL
AQETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELN
AAVLSRAQVLVLERLSLADLERLTQRAEQALERRLPLSPEARDALHQMADGDGRALLNLIEQVSAWKVDQPLGREALATR
LMRRAAKYDKSGDEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPKYLARRLTRMAVEDIALADPQAQAICLQAWEA
YERLGSPEGELALAQAVIYLALAPKTNAGYMAYKAARRLAKETGSMSPPKHILNAPTKLMAEQGYGKGYDYDHDAEDGFS
GQNYFPDGVKRPVLYQPVERGFERELRKRTEFFAKKRIQRQGE
>Mature_442_residues
ADLFDSEEAGARAAQNGASDAPRPLADRLRPRTLAEVIGQDQVLGAEAPLGVMLSSGSLSSLIFWGPPGVGKTTIARLLA
QETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNA
AVLSRAQVLVLERLSLADLERLTQRAEQALERRLPLSPEARDALHQMADGDGRALLNLIEQVSAWKVDQPLGREALATRL
MRRAAKYDKSGDEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPKYLARRLTRMAVEDIALADPQAQAICLQAWEAY
ERLGSPEGELALAQAVIYLALAPKTNAGYMAYKAARRLAKETGSMSPPKHILNAPTKLMAEQGYGKGYDYDHDAEDGFSG
QNYFPDGVKRPVLYQPVERGFERELRKRTEFFAKKRIQRQGE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=460, Percent_Identity=40.6521739130435, Blast_Score=322, Evalue=6e-88,
Organism=Homo sapiens, GI18426904, Length=460, Percent_Identity=36.5217391304348, Blast_Score=265, Evalue=7e-71,
Organism=Escherichia coli, GI1787119, Length=424, Percent_Identity=45.7547169811321, Blast_Score=382, Evalue=1e-107,
Organism=Escherichia coli, GI1788167, Length=129, Percent_Identity=32.5581395348837, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=40.9952606635071, Blast_Score=305, Evalue=7e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=215, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48979; Mature: 48848

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLFDSEEAGARAAQNGASDAPRPLADRLRPRTLAEVIGQDQVLGAEAPLGVMLSSGSL
CCCCCCCCHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEECCCCC
SSLIFWGPPGVGKTTIARLLAQETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLL
CEEEEECCCCCCHHHHHHHHHHHCCCCEEEHHHHHHCCHHHHHHHHHHHHHHCCCCEEEE
FVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVLSRAQVLVLERLSLADL
EHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ERLTQRAEQALERRLPLSPEARDALHQMADGDGRALLNLIEQVSAWKVDQPLGREALATR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LMRRAAKYDKSGDEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPKYLARRLTRMAV
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EDIALADPQAQAICLQAWEAYERLGSPEGELALAQAVIYLALAPKTNAGYMAYKAARRLA
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
KETGSMSPPKHILNAPTKLMAEQGYGKGYDYDHDAEDGFSGQNYFPDGVKRPVLYQPVER
HHHCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
GFERELRKRTEFFAKKRIQRQGE
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ADLFDSEEAGARAAQNGASDAPRPLADRLRPRTLAEVIGQDQVLGAEAPLGVMLSSGSL
CCCCCCCHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEECCCCC
SSLIFWGPPGVGKTTIARLLAQETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLL
CEEEEECCCCCCHHHHHHHHHHHCCCCEEEHHHHHHCCHHHHHHHHHHHHHHCCCCEEEE
FVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVLSRAQVLVLERLSLADL
EHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ERLTQRAEQALERRLPLSPEARDALHQMADGDGRALLNLIEQVSAWKVDQPLGREALATR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LMRRAAKYDKSGDEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPKYLARRLTRMAV
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EDIALADPQAQAICLQAWEAYERLGSPEGELALAQAVIYLALAPKTNAGYMAYKAARRLA
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
KETGSMSPPKHILNAPTKLMAEQGYGKGYDYDHDAEDGFSGQNYFPDGVKRPVLYQPVER
HHHCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
GFERELRKRTEFFAKKRIQRQGE
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]