| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080101
Identifier: 99080101
GI number: 99080101
Start: 273804
End: 274844
Strand: Direct
Name: 99080101
Synonym: TM1040_0260
Alternate gene names: NA
Gene position: 273804-274844 (Clockwise)
Preceding gene: 99080100
Following gene: 99080103
Centisome position: 8.55
GC content: 62.44
Gene sequence:
>1041_bases ATGGCGCGGCGTTCCCCTTTTGAAATTGGTGGTTTCCATATTCCGCCCGGCACCCGGCGCACCGTTGATCTGCCGGTGAG CGTGCTGTCGGATCACACACCGGTCAATATGTCGGCGCATGTGATCCACGGGTCCGAGGATGGCCCGACGCTCTTTGTGT CTGCGGCTATCCACGGCGATGAGGTGATCGGAGTGGAGATCGCCCGCCGCCTGTTGCGCAGCCGTCAGTTTGCGCGCCTG CGGGGCACCCTGATCGTGGTGCCCATCGTCAATACCTTCGGGTTTCTCAATCATTCCCGCTATTTGCCGGATCGACGCGA CCTCAATCGCTGCTTTCCCGGCAGCGAGGGAGGCTCGCTCGCCAGCCGCCTCGCGCATCTTTTTATGACAGAGATCGTGG CGCGCTCGGATCTGGGGATTGACCTGCACTCCGCCGCGATCCACCGCACCAACCTGCCGCAGATCCGTGTCTCACCCAAG GCTCAGGATACGCTTGCCTACGCCGATGCCTTTGGCGCGCCGGTGGTGATCCGCTCGGGGCTGCGGGATGGCTCTCTGCG CAAAGAGGCGCAAAAGGCCGGGGTCGATATTCTGCTCTACGAAGCGGGGGAGGGGTTGCGGTTTGACGAGCAATCCGCCC GTGTTGGTGTCGCCGGGATTTTGCGCGTGATGCATGCGCTCGACATGATCCCCGAGGATGGCGTGCCACTGGCCGAAGGT GTGCCGGTTCGCGCCGCGGACTCGGCGTGGGAACGTGCACCCGCCGGCGGATTGCTCCGTGCCTATAAAACCACTGGCGA GATGGTCGAGGCCGGGGATGTGCTCGGGATCGTTGCCGACCCCTTTGGCGAAGAGGAAATGGAACTCACCGCAAGCCAGA CGGGTCTTATCATCGGGCGCGCCAATATGCCCATTGTGAACGAGGGTGACGCGCTGTTTCACATCGCCAGCGTGAATTCC GCCACCGCCGAACAACAGATCGAAACGCTCAACGCGCAGCTTGATGGCGCGGCGATGTTTGACGAGGATGAGATCATCTA G
Upstream 100 bases:
>100_bases GTCTCCTTCAATTACGCCTGGGCCTGATCGCGCGGGACAGATTGTAAAGCGCTGAAAAACCTGCATAGCTTCTCGGACAT CCTGTCCGAGAGGCTTTTTT
Downstream 100 bases:
>100_bases GCTGCTGAAGCGTCACAAGGCGCGTGCAAAGAGGCCGATGATCCGGGTCATCTTTTCGCGGGGCAGGGCGGTTGGTTCGA CCTCAAAGCGGGCCATGTAG
Product: succinylglutamate desuccinylase/aspartoacylase
Products: NA
Alternate protein names: Deacylase; Ectoine Utilization Protein EutE; Succinylglutamate Desuccinylase / Aspartoacylase Family; Succinate Dehydrogenase Subunit Sdh; Succinate Dehydrogenase Subunit; Succinylglutamate Desuccinylase/Aspartoacylase Family; Succinylglutamatedesuccinylase/Aspartoacylase; AstE/AspA Family Protein; N-Acetyl Diamonbutyric Acid Acylase; Deacylase-Like; Succinylglutamate Desuccinylase; Serine Protease; Aminoacylase-2/Carboxypeptidase-Z Family Hydrolase
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MARRSPFEIGGFHIPPGTRRTVDLPVSVLSDHTPVNMSAHVIHGSEDGPTLFVSAAIHGDEVIGVEIARRLLRSRQFARL RGTLIVVPIVNTFGFLNHSRYLPDRRDLNRCFPGSEGGSLASRLAHLFMTEIVARSDLGIDLHSAAIHRTNLPQIRVSPK AQDTLAYADAFGAPVVIRSGLRDGSLRKEAQKAGVDILLYEAGEGLRFDEQSARVGVAGILRVMHALDMIPEDGVPLAEG VPVRAADSAWERAPAGGLLRAYKTTGEMVEAGDVLGIVADPFGEEEMELTASQTGLIIGRANMPIVNEGDALFHIASVNS ATAEQQIETLNAQLDGAAMFDEDEII
Sequences:
>Translated_346_residues MARRSPFEIGGFHIPPGTRRTVDLPVSVLSDHTPVNMSAHVIHGSEDGPTLFVSAAIHGDEVIGVEIARRLLRSRQFARL RGTLIVVPIVNTFGFLNHSRYLPDRRDLNRCFPGSEGGSLASRLAHLFMTEIVARSDLGIDLHSAAIHRTNLPQIRVSPK AQDTLAYADAFGAPVVIRSGLRDGSLRKEAQKAGVDILLYEAGEGLRFDEQSARVGVAGILRVMHALDMIPEDGVPLAEG VPVRAADSAWERAPAGGLLRAYKTTGEMVEAGDVLGIVADPFGEEEMELTASQTGLIIGRANMPIVNEGDALFHIASVNS ATAEQQIETLNAQLDGAAMFDEDEII >Mature_345_residues ARRSPFEIGGFHIPPGTRRTVDLPVSVLSDHTPVNMSAHVIHGSEDGPTLFVSAAIHGDEVIGVEIARRLLRSRQFARLR GTLIVVPIVNTFGFLNHSRYLPDRRDLNRCFPGSEGGSLASRLAHLFMTEIVARSDLGIDLHSAAIHRTNLPQIRVSPKA QDTLAYADAFGAPVVIRSGLRDGSLRKEAQKAGVDILLYEAGEGLRFDEQSARVGVAGILRVMHALDMIPEDGVPLAEGV PVRAADSAWERAPAGGLLRAYKTTGEMVEAGDVLGIVADPFGEEEMELTASQTGLIIGRANMPIVNEGDALFHIASVNSA TAEQQIETLNAQLDGAAMFDEDEII
Specific function: Unknown
COG id: COG3608
COG function: function code R; Predicted deacylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37206; Mature: 37075
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS00132 CARBOXYPEPT_ZN_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRSPFEIGGFHIPPGTRRTVDLPVSVLSDHTPVNMSAHVIHGSEDGPTLFVSAAIHGD CCCCCCCCCCCEECCCCCCEEEECCHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEECCC EVIGVEIARRLLRSRQFARLRGTLIVVPIVNTFGFLNHSRYLPDRRDLNRCFPGSEGGSL EEEHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHH ASRLAHLFMTEIVARSDLGIDLHSAAIHRTNLPQIRVSPKAQDTLAYADAFGAPVVIRSG HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCCEEECC LRDGSLRKEAQKAGVDILLYEAGEGLRFDEQSARVGVAGILRVMHALDMIPEDGVPLAEG CCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC VPVRAADSAWERAPAGGLLRAYKTTGEMVEAGDVLGIVADPFGEEEMELTASQTGLIIGR CCCCCCCHHHHHCCCCCHHHHHHCCCCHHHCCCEEEEEECCCCCCHHEEECCCCEEEEEC ANMPIVNEGDALFHIASVNSATAEQQIETLNAQLDGAAMFDEDEII CCCCEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCEECCCCCCC >Mature Secondary Structure ARRSPFEIGGFHIPPGTRRTVDLPVSVLSDHTPVNMSAHVIHGSEDGPTLFVSAAIHGD CCCCCCCCCCEECCCCCCEEEECCHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEECCC EVIGVEIARRLLRSRQFARLRGTLIVVPIVNTFGFLNHSRYLPDRRDLNRCFPGSEGGSL EEEHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHH ASRLAHLFMTEIVARSDLGIDLHSAAIHRTNLPQIRVSPKAQDTLAYADAFGAPVVIRSG HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCCEEECC LRDGSLRKEAQKAGVDILLYEAGEGLRFDEQSARVGVAGILRVMHALDMIPEDGVPLAEG CCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC VPVRAADSAWERAPAGGLLRAYKTTGEMVEAGDVLGIVADPFGEEEMELTASQTGLIIGR CCCCCCCHHHHHCCCCCHHHHHHCCCCHHHCCCEEEEEECCCCCCHHEEECCCCEEEEEC ANMPIVNEGDALFHIASVNSATAEQQIETLNAQLDGAAMFDEDEII CCCCEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA