Click here to switch to the map view.

The map label for this gene is 99080046

Identifier: 99080046

GI number: 99080046

Start: 222662

End: 223507

Strand: Direct

Name: 99080046

Synonym: TM1040_0205

Alternate gene names: NA

Gene position: 222662-223507 (Clockwise)

Preceding gene: 99080045

Following gene: 99080047

Centisome position: 6.96

GC content: 61.35

Gene sequence:

>846_bases
ATGAAAAGCATTCCATCCCTTGATGATCTCGACCTATTTGCACGCATCGCTCAGGCGGGCGGCTTGGCTGTGGTTGCACG
GCAAAGCGGAGTGAGCGTGCCAACCCTCAGCCGTCGCATGCGCGCGCTCGAACTTCAGATCGGAGTACATTTGTTTGAGC
GTGGCTCTCACGGTTATCGCGTGACTGCGCTGGGGCGGGCATTTCTGAGCGAGACGCGCGCGTTTCAAGCGGAGGCGCAA
CGTCTGCGGCGGATGGTTGCGACGCCTCTGATGGCAGAGGTTCGCATTACTGCGGGCAGTTGGACCTCTGCTTTTCTGGC
GCAGCAGTTGCCGCGCTTCTGGCAGGAGGACGCGCAGTGGCGTCCGGCCTTTCTGGAGGCTGATACGCGGCTGGATATCG
CGCGGCGTGGGGCAGATATTGGCATACGGAACCAGCGTCCTGAGCAAGCCTGGCTGGCTGGGCGGTACACCGGTTTGATT
ACCTATGCGGTTTACGCGATCTCTGATCAGGTGCGAGGCTATGTCGTTTTGCCTGAGAACCAGGCAAAAACGCCATCCGC
AAGATGGGTATGGTCGCACCATGGCGGCGAGGTCGCGGCGACGGCGCGTAGCCCACGCATGGTGGCTGATCTGGCCTGTG
CCGGAGTGGGGCAGGTGGTGCTGCCTCGGTTTGCAGCGGCCATGTTTCCGGCCTTGCAGCAAGTTGGCCCAGAAATTGCG
GAGCTCTCGCATGAGGAATGGCTGGTCTGTCATCACGACGGTCGGCATGATCCACCTGTGCGGGCTGCGCTAGAGGGGAT
CGCAGCTGTGCTGACCGATACAACCCTGCGCCCTATAGGAGCTTGA

Upstream 100 bases:

>100_bases
AGGGCATCCCGCATGACTTTCATTTGTGATATGATGATGCCAGGATTGCCGATGTTTTGATGATGTTAGAGTGGGTGTCT
TTGAAATCTGAGTTTCAAAA

Downstream 100 bases:

>100_bases
CGGCAAAGGCTCCCGCCCGCTCTTGTGCTTCCCATTGGGAAGCCCATCGTGCCGTTGGGCTTGGCGCCGCGCGCGCCCGA
AGGACGCGCGCGGCGCGAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; LysR Family Transcription Regulator Protein; Transcriptional Regulator Protein; Transcription Regulator Protein; LysR Family Regulatory Protein; LysR-Family Transcriptional Regulator; Transcriptional Regulator LysR Family Protein; HTH-Type Transcriptional Regulator; LysR Family Transcriptional Activator; Transcriptional Regulatory Protein LYSR Family; Helix-Turn-Helix Fis-Type; Lysr-Family Transcriptional Regulator; Transcription Regulator Protein Lysr; Transcriptonal Regulator LysR Family; HTH Transcription Regulator Protein; Transcriptional Regulatory Protein; Transcriptional Regulator Of LysR Family; Transcriptional Regulator Lysr Family; Transcriptional Regulator Transcription Regulator Protein; Transcriptional Regulator Protein LysR Family; Regulatory Protein LysR

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKSIPSLDDLDLFARIAQAGGLAVVARQSGVSVPTLSRRMRALELQIGVHLFERGSHGYRVTALGRAFLSETRAFQAEAQ
RLRRMVATPLMAEVRITAGSWTSAFLAQQLPRFWQEDAQWRPAFLEADTRLDIARRGADIGIRNQRPEQAWLAGRYTGLI
TYAVYAISDQVRGYVVLPENQAKTPSARWVWSHHGGEVAATARSPRMVADLACAGVGQVVLPRFAAAMFPALQQVGPEIA
ELSHEEWLVCHHDGRHDPPVRAALEGIAAVLTDTTLRPIGA

Sequences:

>Translated_281_residues
MKSIPSLDDLDLFARIAQAGGLAVVARQSGVSVPTLSRRMRALELQIGVHLFERGSHGYRVTALGRAFLSETRAFQAEAQ
RLRRMVATPLMAEVRITAGSWTSAFLAQQLPRFWQEDAQWRPAFLEADTRLDIARRGADIGIRNQRPEQAWLAGRYTGLI
TYAVYAISDQVRGYVVLPENQAKTPSARWVWSHHGGEVAATARSPRMVADLACAGVGQVVLPRFAAAMFPALQQVGPEIA
ELSHEEWLVCHHDGRHDPPVRAALEGIAAVLTDTTLRPIGA
>Mature_281_residues
MKSIPSLDDLDLFARIAQAGGLAVVARQSGVSVPTLSRRMRALELQIGVHLFERGSHGYRVTALGRAFLSETRAFQAEAQ
RLRRMVATPLMAEVRITAGSWTSAFLAQQLPRFWQEDAQWRPAFLEADTRLDIARRGADIGIRNQRPEQAWLAGRYTGLI
TYAVYAISDQVRGYVVLPENQAKTPSARWVWSHHGGEVAATARSPRMVADLACAGVGQVVLPRFAAAMFPALQQVGPEIA
ELSHEEWLVCHHDGRHDPPVRAALEGIAAVLTDTTLRPIGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30875; Mature: 30875

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIPSLDDLDLFARIAQAGGLAVVARQSGVSVPTLSRRMRALELQIGVHLFERGSHGYR
CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEECCCCCEE
VTALGRAFLSETRAFQAEAQRLRRMVATPLMAEVRITAGSWTSAFLAQQLPRFWQEDAQW
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCHHHHHHHHHHHHHHHHCCCC
RPAFLEADTRLDIARRGADIGIRNQRPEQAWLAGRYTGLITYAVYAISDQVRGYVVLPEN
CCHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
QAKTPSARWVWSHHGGEVAATARSPRMVADLACAGVGQVVLPRFAAAMFPALQQVGPEIA
CCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHH
ELSHEEWLVCHHDGRHDPPVRAALEGIAAVLTDTTLRPIGA
HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKSIPSLDDLDLFARIAQAGGLAVVARQSGVSVPTLSRRMRALELQIGVHLFERGSHGYR
CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEECCCCCEE
VTALGRAFLSETRAFQAEAQRLRRMVATPLMAEVRITAGSWTSAFLAQQLPRFWQEDAQW
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCHHHHHHHHHHHHHHHHCCCC
RPAFLEADTRLDIARRGADIGIRNQRPEQAWLAGRYTGLITYAVYAISDQVRGYVVLPEN
CCHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
QAKTPSARWVWSHHGGEVAATARSPRMVADLACAGVGQVVLPRFAAAMFPALQQVGPEIA
CCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHH
ELSHEEWLVCHHDGRHDPPVRAALEGIAAVLTDTTLRPIGA
HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA