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The map label for this gene is yhbH [C]

Identifier: 99079863

GI number: 99079863

Start: 23940

End: 24503

Strand: Reverse

Name: yhbH [C]

Synonym: TM1040_0022

Alternate gene names: 99079863

Gene position: 24503-23940 (Counterclockwise)

Preceding gene: 99079865

Following gene: 99079862

Centisome position: 0.77

GC content: 56.03

Gene sequence:

>564_bases
ATGCGTTACAAAGTCAGCGGAAAACAGATCGACATCGGCGAATCTCTGCAAACCCACGTAGAGACTGAGTTGAGTGCGGT
TCTGGAGAAATACGCAGGCCGACCGACCGATGCTCAGGTCGTTTTCTCCCGCAACGCGCATGAATTTGTCTGCGAAGCAA
TCGTGCACCTGTCTACCGGCCTGACATGTCAGGCCAAAGCCCATGCCACTGAGATCTATGCGTCTTTTGAAAGCTGCCTT
GAAAAAATGGACAAGCAGCTGCGCCGTTACAAGCGGCGTCTTAAGGACCACCACCGTGATCGCGCCGAGCCGGTTGAACT
TATGGGGGCGAGCTCGTATATCCTCGCGTCTGAAGAAGCGGAATCCGACCAGGAACCGGACTCGCTGCAGCCCATTATCG
TGGCGGAGATGGAAACCAAGATCCCGTCTCTGTCGGTCGGTGAGGCCGTGATGCAGATGGAGCTTGCGGGCTCCCCGGTT
CTCGTGTTCCGCAACGAAGGTAAAGACGGACTGAACGTGGTGTATCGGCGTGAAGATGGCAACATCGGCTGGATCGATCC
CTGA

Upstream 100 bases:

>100_bases
CATTGCATTTCGTGCCCATCCTTCCTGGCGATCCTGACATAGACCGTGCGAACATGCGCACTGTGCTGTGCGGACCCGGG
CAAAACAAAAAGGAGATCAC

Downstream 100 bases:

>100_bases
TTGAATTCCGAAGGGGCCGAGATAAGGCCCCTTCACCCCGAATGGAGCAGTGGCAATGCAGATTTCGAACATCCTCACGC
AGGAGGCCGTCCGTGTTATC

Product: SSU ribosomal protein S30P / sigma 54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRYKVSGKQIDIGESLQTHVETELSAVLEKYAGRPTDAQVVFSRNAHEFVCEAIVHLSTGLTCQAKAHATEIYASFESCL
EKMDKQLRRYKRRLKDHHRDRAEPVELMGASSYILASEEAESDQEPDSLQPIIVAEMETKIPSLSVGEAVMQMELAGSPV
LVFRNEGKDGLNVVYRREDGNIGWIDP

Sequences:

>Translated_187_residues
MRYKVSGKQIDIGESLQTHVETELSAVLEKYAGRPTDAQVVFSRNAHEFVCEAIVHLSTGLTCQAKAHATEIYASFESCL
EKMDKQLRRYKRRLKDHHRDRAEPVELMGASSYILASEEAESDQEPDSLQPIIVAEMETKIPSLSVGEAVMQMELAGSPV
LVFRNEGKDGLNVVYRREDGNIGWIDP
>Mature_187_residues
MRYKVSGKQIDIGESLQTHVETELSAVLEKYAGRPTDAQVVFSRNAHEFVCEAIVHLSTGLTCQAKAHATEIYASFESCL
EKMDKQLRRYKRRLKDHHRDRAEPVELMGASSYILASEEAESDQEPDSLQPIIVAEMETKIPSLSVGEAVMQMELAGSPV
LVFRNEGKDGLNVVYRREDGNIGWIDP

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 20966; Mature: 20966

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYKVSGKQIDIGESLQTHVETELSAVLEKYAGRPTDAQVVFSRNAHEFVCEAIVHLSTG
CCEECCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCC
LTCQAKAHATEIYASFESCLEKMDKQLRRYKRRLKDHHRDRAEPVELMGASSYILASEEA
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCC
ESDQEPDSLQPIIVAEMETKIPSLSVGEAVMQMELAGSPVLVFRNEGKDGLNVVYRREDG
CCCCCCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCC
NIGWIDP
CCCCCCC
>Mature Secondary Structure
MRYKVSGKQIDIGESLQTHVETELSAVLEKYAGRPTDAQVVFSRNAHEFVCEAIVHLSTG
CCEECCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCC
LTCQAKAHATEIYASFESCLEKMDKQLRRYKRRLKDHHRDRAEPVELMGASSYILASEEA
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCC
ESDQEPDSLQPIIVAEMETKIPSLSVGEAVMQMELAGSPVLVFRNEGKDGLNVVYRREDG
CCCCCCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCC
NIGWIDP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430; 3034856 [H]