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The map label for this gene is yecS [H]

Identifier: 104779493

GI number: 104779493

Start: 215108

End: 215776

Strand: Reverse

Name: yecS [H]

Synonym: PSEEN0206

Alternate gene names: 104779493

Gene position: 215776-215108 (Counterclockwise)

Preceding gene: 104779494

Following gene: 104779492

Centisome position: 3.66

GC content: 64.28

Gene sequence:

>669_bases
ATGATCGCTGAAAGCCTGCAACTCGTTGTCGACTCCGTGCCCTTCCTGTTGAAGGGCGCGGGTTATACCGTGCTGCTCAG
CGTCGGCGGCATGTTCTTCGGCCTGGTGCTGGGCTTTGCCCTGGCACTGATGCGGCTGTCGAAGATCCTGCCGCTGGACT
GGCTGGCGCGCATCTACGTGTCGTTCTTCCGGGGCACGCCGCTGCTGGTGCAGCTGTTCGTGATCTATTTCGGCCTGCCG
CAGATCGGTATCGAGCTCGACCCGATCCCCGCGTCGCTGATCGGCCTTTCGCTGAACATGGCCGCGTACATCTGCGAAAT
CCTCCGCGCCGCGATTTCCTCGATAGACCGTGGCCAGTGGGAAGCGGCGGCCAGCATCGGCATGACCCGCACCCAGGCCA
TGCGCCGGGCGATCCTGCCGCAGGCCTTGCGCACTGCGCTGCCGCCTCTCGGTAACAGCTTCATCTCGCTGGTCAAGGAC
ACCGCCCTGGCGGCGACCATCCAGGTGCCCGAGCTGTTCCGCCAGGCGCAGTTGATCACCGCCCGGACCTTCGAGGTCTT
CACCATGTACCTGGCTGTCGCGGTGGTCTACTGGATCCTCTGCAGCATCCTGGCGCACTTCCAGAACCGCATGGAAGCGC
GGGTCAACCAGCACGACCAGGAGCACTGA

Upstream 100 bases:

>100_bases
CTGAACTGCTCGAGGCACTGAACAAGGCCATCGACAAGCTCAAGGCCGACGGCACGCTGGCCAAGCTGTCCGAGAAATAC
TTCGGTGCCGATGTCACCAA

Downstream 100 bases:

>100_bases
GATGATTGTAGTAGAGGGCCTGACCAAACGGTTCAAGGGCCAGACCGTGCTCAACGGCATCGACCTGACCGTGCAGCCCG
GTGAAGTGGTGGCCATCATC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIAESLQLVVDSVPFLLKGAGYTVLLSVGGMFFGLVLGFALALMRLSKILPLDWLARIYVSFFRGTPLLVQLFVIYFGLP
QIGIELDPIPASLIGLSLNMAAYICEILRAAISSIDRGQWEAAASIGMTRTQAMRRAILPQALRTALPPLGNSFISLVKD
TALAATIQVPELFRQAQLITARTFEVFTMYLAVAVVYWILCSILAHFQNRMEARVNQHDQEH

Sequences:

>Translated_222_residues
MIAESLQLVVDSVPFLLKGAGYTVLLSVGGMFFGLVLGFALALMRLSKILPLDWLARIYVSFFRGTPLLVQLFVIYFGLP
QIGIELDPIPASLIGLSLNMAAYICEILRAAISSIDRGQWEAAASIGMTRTQAMRRAILPQALRTALPPLGNSFISLVKD
TALAATIQVPELFRQAQLITARTFEVFTMYLAVAVVYWILCSILAHFQNRMEARVNQHDQEH
>Mature_222_residues
MIAESLQLVVDSVPFLLKGAGYTVLLSVGGMFFGLVLGFALALMRLSKILPLDWLARIYVSFFRGTPLLVQLFVIYFGLP
QIGIELDPIPASLIGLSLNMAAYICEILRAAISSIDRGQWEAAASIGMTRTQAMRRAILPQALRTALPPLGNSFISLVKD
TALAATIQVPELFRQAQLITARTFEVFTMYLAVAVVYWILCSILAHFQNRMEARVNQHDQEH

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=218, Percent_Identity=73.8532110091743, Blast_Score=338, Evalue=1e-94,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=39.1304347826087, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1786873, Length=216, Percent_Identity=36.1111111111111, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1787087, Length=230, Percent_Identity=31.304347826087, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787086, Length=222, Percent_Identity=29.7297297297297, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788645, Length=214, Percent_Identity=35.0467289719626, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI87082239, Length=210, Percent_Identity=31.9047619047619, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786874, Length=190, Percent_Identity=34.7368421052632, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=28.6363636363636, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI48994930, Length=168, Percent_Identity=35.1190476190476, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24557; Mature: 24557

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAESLQLVVDSVPFLLKGAGYTVLLSVGGMFFGLVLGFALALMRLSKILPLDWLARIYV
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
SFFRGTPLLVQLFVIYFGLPQIGIELDPIPASLIGLSLNMAAYICEILRAAISSIDRGQW
HHHCCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
EAAASIGMTRTQAMRRAILPQALRTALPPLGNSFISLVKDTALAATIQVPELFRQAQLIT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTFEVFTMYLAVAVVYWILCSILAHFQNRMEARVNQHDQEH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIAESLQLVVDSVPFLLKGAGYTVLLSVGGMFFGLVLGFALALMRLSKILPLDWLARIYV
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
SFFRGTPLLVQLFVIYFGLPQIGIELDPIPASLIGLSLNMAAYICEILRAAISSIDRGQW
HHHCCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
EAAASIGMTRTQAMRRAILPQALRTALPPLGNSFISLVKDTALAATIQVPELFRQAQLIT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTFEVFTMYLAVAVVYWILCSILAHFQNRMEARVNQHDQEH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]