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The map label for this gene is ybbK [C]

Identifier: 104779459

GI number: 104779459

Start: 173241

End: 173993

Strand: Reverse

Name: ybbK [C]

Synonym: PSEEN0166

Alternate gene names: 104779459

Gene position: 173993-173241 (Counterclockwise)

Preceding gene: 104779460

Following gene: 104779455

Centisome position: 2.95

GC content: 64.14

Gene sequence:

>753_bases
ATGTTCATGCAGTTCGGTTTCGGCACCCTGCTGGTGCTGCTGGCCCTGTTGCTGCTGTCGGCCTTGCGTATCCTGCGCGA
GTACGAGCGCGGGGTGGTGTTCCAGCTCGGGCGCTTCTGGCAGGTCAAGGGGCCGGGGTTGATCATCCTGATCCCGGGGA
TCCAGCAGATGGTGCGGGTCGACTTGCGCACGGTGGTGCTCGACGTGCCGCCCCAGGACGTGATCACCCGCGACAACGTG
TCAGTGAAGGTCAACGCCGTGGTGTACTTCCGCGTGCTCGACCCGCAGAAGGCGATCATCCAGGTCGAGGATTTTCTCAG
CGCCACCAGCCAGCTGGCCCAGACCACCTTGCGCGCGGTGCTCGGCAAGCACGAACTCGACGAACTGCTGGCCGAGCGCG
AGCAGCTCAATGCCGACATCCGCGCCGTGCTCGACGCGCAGACCGACGCTTGGGGCATCAAGGTGGCCAATGTCGAGATC
AAGCATGTCGACCTCAACGAGTCGATGGTCCGCGCCATCGCCCGCCAGGCCGAGGCCGAGCGCGAGCGGCGGGCCAAGGT
GATCCATGCCGAGGGCGAGTTGCAAGCGTCGGAGAAACTGATGCAGGCAGCACAGATGCTGGGCAAGGAGCCTGGGGCGA
TGCAGTTGCGCTACATGCAGACGTTGGGGGCGATTGCCGGGGACAAGAGCTCGACCATCGTCTTTCCGTTGCCGGTGGAC
CTGCTCAAGGGTTTGGTCGACAAACAACGTTGA

Upstream 100 bases:

>100_bases
CGACCCCCTTGCAACCCGGCCAGCACGTCAGGATCTTGGCCCGTAACGGCCTGACGCTCGAAGTCAGCGCCACCGCGCCC
ACGGCGCAAGGAGAGTGAAG

Downstream 100 bases:

>100_bases
AGCCACACGATCCCCTGTAGGAGCCAGCTTGCTGGCGAACAGGTCCGTTCGCCAGCAAGCTGGCTCCTACAGGATGAAGT
TTAGATCGGCGCCCGGCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MFMQFGFGTLLVLLALLLLSALRILREYERGVVFQLGRFWQVKGPGLIILIPGIQQMVRVDLRTVVLDVPPQDVITRDNV
SVKVNAVVYFRVLDPQKAIIQVEDFLSATSQLAQTTLRAVLGKHELDELLAEREQLNADIRAVLDAQTDAWGIKVANVEI
KHVDLNESMVRAIARQAEAERERRAKVIHAEGELQASEKLMQAAQMLGKEPGAMQLRYMQTLGAIAGDKSSTIVFPLPVD
LLKGLVDKQR

Sequences:

>Translated_250_residues
MFMQFGFGTLLVLLALLLLSALRILREYERGVVFQLGRFWQVKGPGLIILIPGIQQMVRVDLRTVVLDVPPQDVITRDNV
SVKVNAVVYFRVLDPQKAIIQVEDFLSATSQLAQTTLRAVLGKHELDELLAEREQLNADIRAVLDAQTDAWGIKVANVEI
KHVDLNESMVRAIARQAEAERERRAKVIHAEGELQASEKLMQAAQMLGKEPGAMQLRYMQTLGAIAGDKSSTIVFPLPVD
LLKGLVDKQR
>Mature_250_residues
MFMQFGFGTLLVLLALLLLSALRILREYERGVVFQLGRFWQVKGPGLIILIPGIQQMVRVDLRTVVLDVPPQDVITRDNV
SVKVNAVVYFRVLDPQKAIIQVEDFLSATSQLAQTTLRAVLGKHELDELLAEREQLNADIRAVLDAQTDAWGIKVANVEI
KHVDLNESMVRAIARQAEAERERRAKVIHAEGELQASEKLMQAAQMLGKEPGAMQLRYMQTLGAIAGDKSSTIVFPLPVD
LLKGLVDKQR

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=248, Percent_Identity=45.5645161290323, Blast_Score=216, Evalue=1e-56,
Organism=Homo sapiens, GI221316744, Length=248, Percent_Identity=47.5806451612903, Blast_Score=215, Evalue=2e-56,
Organism=Homo sapiens, GI21686995, Length=248, Percent_Identity=47.5806451612903, Blast_Score=215, Evalue=3e-56,
Organism=Homo sapiens, GI7657615, Length=247, Percent_Identity=36.4372469635627, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI7305503, Length=230, Percent_Identity=36.0869565217391, Blast_Score=133, Evalue=1e-31,
Organism=Homo sapiens, GI20149563, Length=156, Percent_Identity=36.5384615384615, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI38016907, Length=65, Percent_Identity=52.3076923076923, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI1786697, Length=192, Percent_Identity=33.8541666666667, Blast_Score=124, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI17569493, Length=237, Percent_Identity=46.4135021097046, Blast_Score=223, Evalue=8e-59,
Organism=Caenorhabditis elegans, GI193209764, Length=237, Percent_Identity=46.4135021097046, Blast_Score=222, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI17569497, Length=253, Percent_Identity=42.6877470355731, Blast_Score=207, Evalue=4e-54,
Organism=Caenorhabditis elegans, GI71987612, Length=257, Percent_Identity=43.579766536965, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI25153583, Length=257, Percent_Identity=43.579766536965, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI71987621, Length=257, Percent_Identity=43.579766536965, Blast_Score=201, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17569499, Length=243, Percent_Identity=45.2674897119342, Blast_Score=200, Evalue=7e-52,
Organism=Caenorhabditis elegans, GI193210507, Length=243, Percent_Identity=43.6213991769547, Blast_Score=193, Evalue=7e-50,
Organism=Caenorhabditis elegans, GI17570161, Length=243, Percent_Identity=43.6213991769547, Blast_Score=193, Evalue=7e-50,
Organism=Caenorhabditis elegans, GI17570459, Length=247, Percent_Identity=40.4858299595142, Blast_Score=191, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI71989948, Length=234, Percent_Identity=44.017094017094, Blast_Score=183, Evalue=7e-47,
Organism=Caenorhabditis elegans, GI32566490, Length=211, Percent_Identity=46.9194312796209, Blast_Score=178, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI71989955, Length=184, Percent_Identity=46.195652173913, Blast_Score=146, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI32564147, Length=168, Percent_Identity=38.0952380952381, Blast_Score=116, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI71989963, Length=124, Percent_Identity=45.1612903225806, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17542664, Length=161, Percent_Identity=29.1925465838509, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI45556022, Length=242, Percent_Identity=46.6942148760331, Blast_Score=216, Evalue=9e-57,
Organism=Drosophila melanogaster, GI24657857, Length=235, Percent_Identity=49.7872340425532, Blast_Score=211, Evalue=4e-55,
Organism=Drosophila melanogaster, GI62484448, Length=235, Percent_Identity=49.7872340425532, Blast_Score=211, Evalue=5e-55,
Organism=Drosophila melanogaster, GI62484274, Length=235, Percent_Identity=49.7872340425532, Blast_Score=210, Evalue=6e-55,
Organism=Drosophila melanogaster, GI281365664, Length=235, Percent_Identity=49.7872340425532, Blast_Score=210, Evalue=8e-55,
Organism=Drosophila melanogaster, GI18860517, Length=247, Percent_Identity=46.1538461538462, Blast_Score=206, Evalue=1e-53,
Organism=Drosophila melanogaster, GI28573263, Length=246, Percent_Identity=41.4634146341463, Blast_Score=196, Evalue=1e-50,
Organism=Drosophila melanogaster, GI21356845, Length=238, Percent_Identity=39.4957983193277, Blast_Score=195, Evalue=3e-50,
Organism=Drosophila melanogaster, GI281361633, Length=238, Percent_Identity=38.2352941176471, Blast_Score=186, Evalue=1e-47,
Organism=Drosophila melanogaster, GI281361631, Length=238, Percent_Identity=38.2352941176471, Blast_Score=186, Evalue=1e-47,
Organism=Drosophila melanogaster, GI281361635, Length=182, Percent_Identity=40.6593406593407, Blast_Score=149, Evalue=2e-36,
Organism=Drosophila melanogaster, GI45550506, Length=165, Percent_Identity=41.2121212121212, Blast_Score=129, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 27901; Mature: 27901

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMQFGFGTLLVLLALLLLSALRILREYERGVVFQLGRFWQVKGPGLIILIPGIQQMVRV
CCEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCEEEECCCCEEEEECCHHHHHHH
DLRTVVLDVPPQDVITRDNVSVKVNAVVYFRVLDPQKAIIQVEDFLSATSQLAQTTLRAV
HHHHEEEECCCHHHEECCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LGKHELDELLAEREQLNADIRAVLDAQTDAWGIKVANVEIKHVDLNESMVRAIARQAEAE
HCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHH
RERRAKVIHAEGELQASEKLMQAAQMLGKEPGAMQLRYMQTLGAIAGDKSSTIVFPLPVD
HHHHHEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHH
LLKGLVDKQR
HHHHHHCCCC
>Mature Secondary Structure
MFMQFGFGTLLVLLALLLLSALRILREYERGVVFQLGRFWQVKGPGLIILIPGIQQMVRV
CCEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCEEEECCCCEEEEECCHHHHHHH
DLRTVVLDVPPQDVITRDNVSVKVNAVVYFRVLDPQKAIIQVEDFLSATSQLAQTTLRAV
HHHHEEEECCCHHHEECCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LGKHELDELLAEREQLNADIRAVLDAQTDAWGIKVANVEIKHVDLNESMVRAIARQAEAE
HCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHH
RERRAKVIHAEGELQASEKLMQAAQMLGKEPGAMQLRYMQTLGAIAGDKSSTIVFPLPVD
HHHHHEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHH
LLKGLVDKQR
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]