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The map label for this gene is algB [H]

Identifier: 104779399

GI number: 104779399

Start: 84758

End: 86104

Strand: Reverse

Name: algB [H]

Synonym: PSEEN0087

Alternate gene names: 104779399

Gene position: 86104-84758 (Counterclockwise)

Preceding gene: 104779405

Following gene: 104779398

Centisome position: 1.46

GC content: 65.48

Gene sequence:

>1347_bases
ATGGAATCAGCCCAGGACAACCAAGGCCGCATTCTGCTGGTGGACGACGAGTCCGCGATCCTGCGCACCTTCCGTTACTG
CCTCGAAGACGAAGGCTACAGCGTGGCCACCGCCAACAGCGCTGCCCAGGCCGAGACCCTGCTGCAGCGCCAGGTGTTCG
ACCTGTGCTTCCTCGACCTTCGTCTGGGCGAGGACAACGGCCTCGATGTCCTGGCACAGATGCGCATCCAGGCCCCCTGG
ATGCGGGTGGTGATCGTCACCGCGCACTCCGCCATCGACACCGCAGTCGACGCCATCCAGGCCGGTGCCGCCGACTACCT
GGTCAAGCCCTGCAGTCCCGACCAGCTGCGCTTGGCCACGGCCAAGCAGCTGGAAGTGCGGCAGCTGTCGGCGCGCCTGG
AAGCCCTCGAAGGCGAAGTGCGCAAACCCAAGGATGGCTTGGATTCCCACAGCCCGGCCATGATGGCCGTGCTGGAAACC
GCCCGGCAGGTGGCGACCACCGACGCCAACATCCTCATCCTCGGCGAGTCCGGCACCGGCAAGGGGGAGCTGGCCCGTGC
CATCCATGGCTGGAGCAAGCGTGCACGCAAGGCCTGCGTGACCATCAACTGCCCATCGCTCAACGCCGAGCTGATGGAAA
GCGAGCTGTTCGGCCACACCCGCGGGGCGTTCACCGGTGCCAGCGAAAGCACCTTGGGACGCGTCAGCCAGGCCGATGGC
GGAACGCTGTTTCTCGACGAGATTGGCGATTTTCCCCTCACCTTGCAGCCTAAGTTGCTGCGCTTCATCCAGGACAAAGA
ATATGAACGGGTCGGCGACCCGGTCACCCGCCGCGCCGATGTGCGCATCCTGGCGGCGACCAACCTCAACCTTGAGGAGA
TGGTCCGTGAAAACCGCTTCCGCGAAGACCTGCTATACCGCCTGAATGTCATCACCTTGCACTTGCCGCCCCTGCGCGAA
CGCAGCGAGGACATCCTGACCCTGGCCGACCGCTTCCTGGCCCGCTTCGTCAAGGAATACTCGCGGCCAGCCAAAGCCTT
CAGCGACGAGGCCCGCGCGGCATTGCTCAACTACCGCTGGCCGGGCAACATCCGCGAGCTGCGCAACGTGGTCGAGCGCG
CCAGCATCATCTGCCCCCAGGAGCGGGTGGAGATCAGCCACCTGGGCATGGGCGAGCAACCCGCCGGCAACACGCCACGA
GTCGGCGCCGCCCTGAGCCTGGAAGAACTGGAGCGCGCTCACATCGGCGCGGTGCTGGCCACCAGTGACACCCTCGACCA
GGCCGCCAAGACCCTGGGTATCGACGCCTCCACGCTGTACCGCAAGCGCAAGCAGTACAACTTATGA

Upstream 100 bases:

>100_bases
AGCGGCTAGCATGCAGTCAGACGAATCAATCAGAATCAACCATGCAACTTGCCCGATTTTTCCGACACTAATTGAGACCA
ACCCCAAAGGAGCGCAGCAA

Downstream 100 bases:

>100_bases
AATGGCCGATGAAGCTGCGCACGCGCCTGTTCCTCAGCATCTCGGCGCTGATCACGGTGGCGCTGCTCGGGCTGCTGCTG
GGCCTGGTCAGCGTGATGCA

Product: alginate biosynthesis response regulator AlgB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MESAQDNQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDLRLGEDNGLDVLAQMRIQAPW
MRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGEVRKPKDGLDSHSPAMMAVLET
ARQVATTDANILILGESGTGKGELARAIHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADG
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRENRFREDLLYRLNVITLHLPPLRE
RSEDILTLADRFLARFVKEYSRPAKAFSDEARAALLNYRWPGNIRELRNVVERASIICPQERVEISHLGMGEQPAGNTPR
VGAALSLEELERAHIGAVLATSDTLDQAAKTLGIDASTLYRKRKQYNL

Sequences:

>Translated_448_residues
MESAQDNQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDLRLGEDNGLDVLAQMRIQAPW
MRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGEVRKPKDGLDSHSPAMMAVLET
ARQVATTDANILILGESGTGKGELARAIHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADG
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRENRFREDLLYRLNVITLHLPPLRE
RSEDILTLADRFLARFVKEYSRPAKAFSDEARAALLNYRWPGNIRELRNVVERASIICPQERVEISHLGMGEQPAGNTPR
VGAALSLEELERAHIGAVLATSDTLDQAAKTLGIDASTLYRKRKQYNL
>Mature_448_residues
MESAQDNQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDLRLGEDNGLDVLAQMRIQAPW
MRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGEVRKPKDGLDSHSPAMMAVLET
ARQVATTDANILILGESGTGKGELARAIHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADG
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRENRFREDLLYRLNVITLHLPPLRE
RSEDILTLADRFLARFVKEYSRPAKAFSDEARAALLNYRWPGNIRELRNVVERASIICPQERVEISHLGMGEQPAGNTPR
VGAALSLEELERAHIGAVLATSDTLDQAAKTLGIDASTLYRKRKQYNL

Specific function: Positive regulator of the alginate biosynthetic gene algD [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1790437, Length=440, Percent_Identity=42.5, Blast_Score=315, Evalue=3e-87,
Organism=Escherichia coli, GI1788550, Length=378, Percent_Identity=42.5925925925926, Blast_Score=300, Evalue=1e-82,
Organism=Escherichia coli, GI1790299, Length=472, Percent_Identity=37.5, Blast_Score=275, Evalue=5e-75,
Organism=Escherichia coli, GI1788905, Length=365, Percent_Identity=42.1917808219178, Blast_Score=271, Evalue=5e-74,
Organism=Escherichia coli, GI1789087, Length=305, Percent_Identity=44.5901639344262, Blast_Score=241, Evalue=5e-65,
Organism=Escherichia coli, GI87082117, Length=227, Percent_Identity=52.863436123348, Blast_Score=238, Evalue=8e-64,
Organism=Escherichia coli, GI1789233, Length=309, Percent_Identity=40.7766990291262, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI87081872, Length=232, Percent_Identity=47.8448275862069, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI87082152, Length=315, Percent_Identity=41.2698412698413, Blast_Score=201, Evalue=8e-53,
Organism=Escherichia coli, GI1787583, Length=304, Percent_Identity=37.5, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI1786524, Length=245, Percent_Identity=44.8979591836735, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1789828, Length=314, Percent_Identity=34.0764331210191, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI87081858, Length=329, Percent_Identity=30.6990881458967, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1789809, Length=112, Percent_Identity=33.0357142857143, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790552, Length=108, Percent_Identity=32.4074074074074, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 49651; Mature: 49651

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESAQDNQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDL
CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHE
RLGEDNGLDVLAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLAT
EECCCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHCCCHHHEECCCCCCCEEHHH
AKQLEVRQLSARLEALEGEVRKPKDGLDSHSPAMMAVLETARQVATTDANILILGESGTG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
KGELARAIHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADG
HHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRENRF
CEEEHHCCCCCCCEECHHHHHHHHCCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
REDLLYRLNVITLHLPPLRERSEDILTLADRFLARFVKEYSRPAKAFSDEARAALLNYRW
HHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCC
PGNIRELRNVVERASIICPQERVEISHLGMGEQPAGNTPRVGAALSLEELERAHIGAVLA
CCCHHHHHHHHHHHHHCCCHHHCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEE
TSDTLDQAAKTLGIDASTLYRKRKQYNL
CCHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MESAQDNQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDL
CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHE
RLGEDNGLDVLAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLAT
EECCCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHCCCHHHEECCCCCCCEEHHH
AKQLEVRQLSARLEALEGEVRKPKDGLDSHSPAMMAVLETARQVATTDANILILGESGTG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
KGELARAIHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADG
HHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRENRF
CEEEHHCCCCCCCEECHHHHHHHHCCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
REDLLYRLNVITLHLPPLRERSEDILTLADRFLARFVKEYSRPAKAFSDEARAALLNYRW
HHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCC
PGNIRELRNVVERASIICPQERVEISHLGMGEQPAGNTPRVGAALSLEELERAHIGAVLA
CCCHHHHHHHHHHHHHCCCHHHCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEE
TSDTLDQAAKTLGIDASTLYRKRKQYNL
CCHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]