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The map label for this gene is yqhC [H]

Identifier: 94986335

GI number: 94986335

Start: 2356781

End: 2357599

Strand: Reverse

Name: yqhC [H]

Synonym: Dgeo_2236

Alternate gene names: 94986335

Gene position: 2357599-2356781 (Counterclockwise)

Preceding gene: 94986336

Following gene: 94986332

Centisome position: 95.56

GC content: 61.42

Gene sequence:

>819_bases
GTGCACGCCGTCCGGCGGTCCCGAACGAACACCGAGTTGGTCCACGGGTTCTATCATCCCTCGCTGTGCATTGTAGCGAG
GGGCGCCAAGAGCGTTTTACTGGGCACGGAGATCTACAAGTACGACGCTTCGCAGATGCTGGTCGTGTCGGTGGATCTTC
CCGTGGCTTCTCAGGTCACCCGAGCGAGCTTTGCCGAGCCGTTCTTGTGTCTTAAGCTGGACCTTGATCCACGCAGAATC
ACCGAGCTGGCTTTCAGGGTGTATCCGCACGGCCTGCCGAAAGTCCGGGAGAACCGTGGGGTCTGCGTCGGTCAGGCAGA
TGCGAGCATTGTGAACGCCGCAACACGTCTCCTCGAATTGATGGCGGATGAGCGGGACGCGGAACTGCTTGCCCCGCTGG
TCGTTGAGGAAATTCTGATTCGCTTGTTGCGGGGTCCAATGGGGAGCCGGGTCGCGCAGCTTGGGGAAGTGGAATCCAGC
ATGCACCGGATTGCCCGAGCCGTTGATTGGGTGCGTGCCCATTTCGACCAACCCATGAACGTTCAGGCGCTGGCCGAGCT
GGTCCACATGAGCCCAAGTGCGTTCCACGCACACTTTCGAGCAGTGACCTCACTGAGCCCGCTCCAGTATCAGAAGGTGC
TGCGCCTGCGGGAGGCAAGGCGGCTGATGCTGACAGCCAACTTGGACGTGGGGACGGCTGGACGGCAGGTGGGCTATGCC
AGTGCGTCGCAGTTCAGCCGGGAGTATCACCGCCTGTTCGGGAGGGCACCGACCCAGGACATCGCTCAGTTGCGTGAGCA
TGCGAGCAGAACGAGTTGA

Upstream 100 bases:

>100_bases
TCCCTTTCCTCTGCCAGGCGAAGCCGACCTTGCCCGCTTGGCCAGGTTGCTGCGCGCCCACACGCCCTATGACGGCAGTT
TTGAGCTGCGTCTACCCGGT

Downstream 100 bases:

>100_bases
TCCTGTGGGAGCGCGTCAAGCTGGAGCGGGGCTTGTGATAGGCAAGTTGAAATTGTTCTGGCGAGAGAGGCACGGGCTGG
TCGGGTGGCCTTCACGCCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MHAVRRSRTNTELVHGFYHPSLCIVARGAKSVLLGTEIYKYDASQMLVVSVDLPVASQVTRASFAEPFLCLKLDLDPRRI
TELAFRVYPHGLPKVRENRGVCVGQADASIVNAATRLLELMADERDAELLAPLVVEEILIRLLRGPMGSRVAQLGEVESS
MHRIARAVDWVRAHFDQPMNVQALAELVHMSPSAFHAHFRAVTSLSPLQYQKVLRLREARRLMLTANLDVGTAGRQVGYA
SASQFSREYHRLFGRAPTQDIAQLREHASRTS

Sequences:

>Translated_272_residues
MHAVRRSRTNTELVHGFYHPSLCIVARGAKSVLLGTEIYKYDASQMLVVSVDLPVASQVTRASFAEPFLCLKLDLDPRRI
TELAFRVYPHGLPKVRENRGVCVGQADASIVNAATRLLELMADERDAELLAPLVVEEILIRLLRGPMGSRVAQLGEVESS
MHRIARAVDWVRAHFDQPMNVQALAELVHMSPSAFHAHFRAVTSLSPLQYQKVLRLREARRLMLTANLDVGTAGRQVGYA
SASQFSREYHRLFGRAPTQDIAQLREHASRTS
>Mature_272_residues
MHAVRRSRTNTELVHGFYHPSLCIVARGAKSVLLGTEIYKYDASQMLVVSVDLPVASQVTRASFAEPFLCLKLDLDPRRI
TELAFRVYPHGLPKVRENRGVCVGQADASIVNAATRLLELMADERDAELLAPLVVEEILIRLLRGPMGSRVAQLGEVESS
MHRIARAVDWVRAHFDQPMNVQALAELVHMSPSAFHAHFRAVTSLSPLQYQKVLRLREARRLMLTANLDVGTAGRQVGYA
SASQFSREYHRLFGRAPTQDIAQLREHASRTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=251, Percent_Identity=33.8645418326693, Blast_Score=141, Evalue=4e-35,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30402; Mature: 30402

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAVRRSRTNTELVHGFYHPSLCIVARGAKSVLLGTEIYKYDASQMLVVSVDLPVASQVT
CCCCHHCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHH
RASFAEPFLCLKLDLDPRRITELAFRVYPHGLPKVRENRGVCVGQADASIVNAATRLLEL
HHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHCCCCCEEECCHHHHHHHHHHHHHH
MADERDAELLAPLVVEEILIRLLRGPMGSRVAQLGEVESSMHRIARAVDWVRAHFDQPMN
HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VQALAELVHMSPSAFHAHFRAVTSLSPLQYQKVLRLREARRLMLTANLDVGTAGRQVGYA
HHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCH
SASQFSREYHRLFGRAPTQDIAQLREHASRTS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHAVRRSRTNTELVHGFYHPSLCIVARGAKSVLLGTEIYKYDASQMLVVSVDLPVASQVT
CCCCHHCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHH
RASFAEPFLCLKLDLDPRRITELAFRVYPHGLPKVRENRGVCVGQADASIVNAATRLLEL
HHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHCCCCCEEECCHHHHHHHHHHHHHH
MADERDAELLAPLVVEEILIRLLRGPMGSRVAQLGEVESSMHRIARAVDWVRAHFDQPMN
HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VQALAELVHMSPSAFHAHFRAVTSLSPLQYQKVLRLREARRLMLTANLDVGTAGRQVGYA
HHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCH
SASQFSREYHRLFGRAPTQDIAQLREHASRTS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]