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The map label for this gene is rpe [H]

Identifier: 94985420

GI number: 94985420

Start: 1401363

End: 1402052

Strand: Reverse

Name: rpe [H]

Synonym: Dgeo_1319

Alternate gene names: 94985420

Gene position: 1402052-1401363 (Counterclockwise)

Preceding gene: 94985424

Following gene: 94985419

Centisome position: 56.83

GC content: 66.09

Gene sequence:

>690_bases
GTGATTTCCAATTCAGCCGACCCCGCTTCCTCTCCGGCAAGGCGCGTGAAGCTCGCCCCTAGTCTCTTGGCCTGCGATTT
CACGCAGCTGGGCGAGGAGCTAAAGCGGATTGCGAGCGCCGAGTATGCCCATGTGGACGTGATGGACGGCCTGTTTGTTC
CCAACATCTCCTTTGGGCTGCCGATTCTGAGTGCGGCGCGCCGCGCCAGTTCACTTTTCATGGACGTTCACCTCATGATC
GAACGGCCCGAGCGCTACCTGCGCGACTTTGCGGAGGCGGGCGCGGACGGCCTGACCGTGCATGTGGAGGCCACGCCGCA
CATTCACCGTGCGGTCGGCCTGATCCGTGAGCTGGGCAAGCGGGCGGGTGTGACCCTCAACCCCGGCACGCCGCTGGAGG
CGGTGCGGCCCGTGTTGCCTGATGTGGATCTGGTGCTGGTGATGAGCGTAAACCCCGGTTTCGGTGGCCAGAAGTTTATC
CCTGAAAGTGTGGAACGCGTTCGCACCCTGCGCCGCTGGCTCGACGAGCTGGGCAGCGCCGCCGAGCTGGAGGTGGACGG
CGGCATCACGCCGCAGAATGCCCGTCTGCTCGCGGACGCGGGCGCGACGGTCCTGGTCGCGGGCAGCAGTGTCTTTGGTC
CTCAGGGGCCCGAGGTGGGCCTCGCCCGCTTACGAGAGGCGCTCGCTTGA

Upstream 100 bases:

>100_bases
CGCTGGAGGGGTGCTGGACGTGGCGCCGGAGGTTCCGGTATGACCTTCCCTCCATTGCTGTGGTGTTTTTCACAAATTTG
TCAATGTTAAACTCTTTGTT

Downstream 100 bases:

>100_bases
GGCTGCGCGTAGATCTCCTGCCGCACGGCAACTATCCTGATGTCGTGCTGGTGGTGGATGTGCTGCGCGCCACCACCACC
GCCGTCACGTACCTCGAACG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MISNSADPASSPARRVKLAPSLLACDFTQLGEELKRIASAEYAHVDVMDGLFVPNISFGLPILSAARRASSLFMDVHLMI
ERPERYLRDFAEAGADGLTVHVEATPHIHRAVGLIRELGKRAGVTLNPGTPLEAVRPVLPDVDLVLVMSVNPGFGGQKFI
PESVERVRTLRRWLDELGSAAELEVDGGITPQNARLLADAGATVLVAGSSVFGPQGPEVGLARLREALA

Sequences:

>Translated_229_residues
MISNSADPASSPARRVKLAPSLLACDFTQLGEELKRIASAEYAHVDVMDGLFVPNISFGLPILSAARRASSLFMDVHLMI
ERPERYLRDFAEAGADGLTVHVEATPHIHRAVGLIRELGKRAGVTLNPGTPLEAVRPVLPDVDLVLVMSVNPGFGGQKFI
PESVERVRTLRRWLDELGSAAELEVDGGITPQNARLLADAGATVLVAGSSVFGPQGPEVGLARLREALA
>Mature_229_residues
MISNSADPASSPARRVKLAPSLLACDFTQLGEELKRIASAEYAHVDVMDGLFVPNISFGLPILSAARRASSLFMDVHLMI
ERPERYLRDFAEAGADGLTVHVEATPHIHRAVGLIRELGKRAGVTLNPGTPLEAVRPVLPDVDLVLVMSVNPGFGGQKFI
PESVERVRTLRRWLDELGSAAELEVDGGITPQNARLLADAGATVLVAGSSVFGPQGPEVGLARLREALA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=221, Percent_Identity=38.4615384615385, Blast_Score=164, Evalue=5e-41,
Organism=Homo sapiens, GI219879828, Length=218, Percent_Identity=36.2385321100917, Blast_Score=148, Evalue=4e-36,
Organism=Homo sapiens, GI24307923, Length=172, Percent_Identity=32.5581395348837, Blast_Score=101, Evalue=5e-22,
Organism=Escherichia coli, GI1789788, Length=219, Percent_Identity=42.0091324200913, Blast_Score=176, Evalue=8e-46,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=37.5634517766497, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790754, Length=209, Percent_Identity=32.5358851674641, Blast_Score=107, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17552948, Length=218, Percent_Identity=36.697247706422, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6322341, Length=227, Percent_Identity=39.647577092511, Blast_Score=171, Evalue=9e-44,
Organism=Drosophila melanogaster, GI24586301, Length=217, Percent_Identity=35.0230414746544, Blast_Score=154, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24444; Mature: 24444

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISNSADPASSPARRVKLAPSLLACDFTQLGEELKRIASAEYAHVDVMDGLFVPNISFGL
CCCCCCCCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHCCCHHEEEHHCCEECCCCCCCC
PILSAARRASSLFMDVHLMIERPERYLRDFAEAGADGLTVHVEATPHIHRAVGLIRELGK
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
RAGVTLNPGTPLEAVRPVLPDVDLVLVMSVNPGFGGQKFIPESVERVRTLRRWLDELGSA
HCCEEECCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
AELEVDGGITPQNARLLADAGATVLVAGSSVFGPQGPEVGLARLREALA
EEEEECCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHC
>Mature Secondary Structure
MISNSADPASSPARRVKLAPSLLACDFTQLGEELKRIASAEYAHVDVMDGLFVPNISFGL
CCCCCCCCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHCCCHHEEEHHCCEECCCCCCCC
PILSAARRASSLFMDVHLMIERPERYLRDFAEAGADGLTVHVEATPHIHRAVGLIRELGK
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
RAGVTLNPGTPLEAVRPVLPDVDLVLVMSVNPGFGGQKFIPESVERVRTLRRWLDELGSA
HCCEEECCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
AELEVDGGITPQNARLLADAGATVLVAGSSVFGPQGPEVGLARLREALA
EEEEECCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]