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The map label for this gene is ydcP [H]

Identifier: 94985379

GI number: 94985379

Start: 1357763

End: 1360306

Strand: Reverse

Name: ydcP [H]

Synonym: Dgeo_1278

Alternate gene names: 94985379

Gene position: 1360306-1357763 (Counterclockwise)

Preceding gene: 94985380

Following gene: 94985378

Centisome position: 55.14

GC content: 69.18

Gene sequence:

>2544_bases
ATGGCGCGTGCGCGAGTGAAACCCGAAGTGATGAGCCCCGTAGGCGGCTGGCCGCAGCTCCGTGCGGCGGTGGAGGCCGG
AGCGGACGCCGTATTCTTCGGCGTTCAGTCCACGCGGGGCCAAGGGTTTCACGCGCGGGCAAAGGTGGGCTTCACGGACG
AGGAACTCCCCGACATCATGCGGAGGCTCCATGAGCGCGGCGTGCTGGGCTTCGTGACCTTCAACATTCTGATCTTCGAC
CGCGAGCTGCGCGAGGCCGAGCGGCAGCTGATGCACCTGGCCGAGTCCGGCGTGGACGCGATCATCGTGCAGGACCACGG
AGTCGCCCGACTAGCCCACGAGATTTGTCCTGACCTCCCGATTCACGGCAGCACCCAGATGAGCATCACCTCCGCCGAGG
GTGCAGAACTCGCGCGGCGCTTCGGCGCGAGCCGCGTGGTGCTGGGCCGGGAGCTGTCCCTGCGCGATATCCGGCGCATT
GCCGCGCAGACCGATATGGAGCTGGAAACCTTTGTCCACGGGGCGCTGTGCGTAAGTTACAGCGGCCAGTGCTTTTCGAG
TGAGGCGTGGGGCGGGCGCAGCGCCAACCGCGGACAGTGCGCGCAGGCCTGCCGCCTTCCCTATGACCTGCTGGTCGATG
GTCAGCACCGCGACTTGGGCGATGCTCGGTACCTGCTCTCGCCCGGCGACCTGTATGCCCTGCACCAGGTCCCCGAGCTG
GTGCAGATCGGCGTGGACTGCCTCAAGATCGAGGGCCGCTACAAGGACGCCGATTTCGTGGCCCTCACGACCGCCGCCTA
CCGCAAGGCCGTGGATGAGGCCTGGGCAGGCCTGCCCCTCAGCGTGACGCCGGGCGAGGAACGCGATCTGGAACAGGTGT
ATTCGCGCGGTCTAGGACCACACTTTCTCAGTGGCACCAATCATCAGCGGGTGGTGCGTGGGCGCGCCCCGCGTCACCGT
GGCGTGCAGGTGGGCACCGTGCGCGGCACCACCGCACGCGGCGTGCTGGTCGAACTCTCCGAGGAGGTCAAGCCCGGCGA
CGGCCTGGTCTTCGATCCAGCCAACTGGCGCACGCCCGAAGGCCGCGAGGAGGGGGGCTTCCTGTACGGGCTGTGGCAGG
GGGGACGGCAGGTGGACGGCGTGCGGCCCGGCGCTGTGGCCGAACTCCGCTTCGGACGCGGCGCGGTGGACCCGGCCCGT
GTGCGCCCCGGCGACCCGGTCTGGCGCACCCACGATCCGGCGCTGAGCGCCCGCGTGAGGCCCTTGCTGGAGGCGAGCGA
TCCCGTCTACACCCGCCCGGTCACCGCCCATTTCCGGGGACACGTCGGGGAGGTTCCCGCCCTCACCCTCACGGACGAGC
GGGGACGCAGCGTCACGGTGACCCTGCCGGCGCCGCTCCAGTCCGCTCGCAACCGCGCCCTCGATGAGGTGGTCCTGCGC
GAGCAGCTCGGCAAGCTGGGCGGCACCGGGTACCACTTGGCGGCCCTCACCACGGACCTGGTTGGTGCCGGGTTCCTCCC
GGTCGCGCAGCTGAACGCGCTGCGCCGCGAGGCCGCCGAGGCCCTTACCGCCCGGCGCGGCCAGACCCCCGAGCGCCGCG
TCGTGCCTCGGCTGGACGAGGTATTGCGGAAGGGAGAGACTCCCCGGCCCGCCGCCCCCACCTTGCCGCCCCGTCTTCAT
GTTCTTGTCCGCACGCCCGAACAGCTGGAGGCCGCCATCGCGGAGCGGCCCGACTCGATCACGCTCGACTACCTCGAACT
GTACGGCTTGAAATCCAGCGTGGAGCGGGTGCGTGAGGCGGGCCTTCCCGTACGGGTTGCCAGCCCGCGCATCCTCAAGC
CCACCGAGCAGAATCTCCAGAAGTTCCTGCTCTCGTTGGGAGCCGACCTGCTGGTGCGCTCGGGCGGCCTGCTCGAAGGG
TTGCAGAACACGCCGGACCGGCCGGTCCTTACGGGTGATTTCAGCCTGAACGCCGCAAATGTCCTCACCACGCGGGCGCT
GCTCGATCTGGGGTTGAGCCGCATAACGCCCACCCACGACCTGAACGCGCGGCAGATCACTGATCTCGCTTCGCTTGTTG
GCCCGGAGCGGCTGGAGGTGATTGCCTACCAGCACCTCCCGGTGTTCCACACCGAGCACTGCGTGTTTTGCCGTTTTCTG
TCGGAGGGAACCGACTACACAAACTGCGGGCACCCCTGCGAAGCCCACCGGGTCGCCCTGCGGGACGAGCGGGGGATTGC
CCATCCCGTGATGGCCGACGTGGGTTGCCGCAACACTGTGTTCGAGGGGCGTCCGCAGATCGCGGCGGGGCACCTGGAGG
CCTGGCTGGCGGCGGGTCTGCGGGACTTCCGCCTGGAATTCGTCCACGAGACGTCCGCGCAGGTTCGCGAGGTGATCCAA
GCCCACCGGGCCTTCCTGGCCCGCGAGTTGGATTCGGCGGGACTCGAGGCCGCCCTGCAGGCTCTCTCCGAGCAGGGTGT
GACCGAGGGCAGCCTGTTCGTGCCGGAAGGCTTTGACCGCCTGCCCGCTCTCCCTGTCCTCTGA

Upstream 100 bases:

>100_bases
CGCGCCGATCATGCGGTCAAGGATTGGACAGCCGGAGGAAGGCCCTGACCCTTGCCTCGCTCACGCTGGGGGCGGGGGCC
TTGGGCTAGACTGGCACGTT

Downstream 100 bases:

>100_bases
AGGCTGGCTTCTGCCGGCCAACCATTGAGATTGCCTCAAGGTGAACTTGGGAGAATGTTCATGTTCCTGGGGGGGGCTGA
TCCGGTACGGTGGTGCATGC

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 847; Mature: 846

Protein sequence:

>847_residues
MARARVKPEVMSPVGGWPQLRAAVEAGADAVFFGVQSTRGQGFHARAKVGFTDEELPDIMRRLHERGVLGFVTFNILIFD
RELREAERQLMHLAESGVDAIIVQDHGVARLAHEICPDLPIHGSTQMSITSAEGAELARRFGASRVVLGRELSLRDIRRI
AAQTDMELETFVHGALCVSYSGQCFSSEAWGGRSANRGQCAQACRLPYDLLVDGQHRDLGDARYLLSPGDLYALHQVPEL
VQIGVDCLKIEGRYKDADFVALTTAAYRKAVDEAWAGLPLSVTPGEERDLEQVYSRGLGPHFLSGTNHQRVVRGRAPRHR
GVQVGTVRGTTARGVLVELSEEVKPGDGLVFDPANWRTPEGREEGGFLYGLWQGGRQVDGVRPGAVAELRFGRGAVDPAR
VRPGDPVWRTHDPALSARVRPLLEASDPVYTRPVTAHFRGHVGEVPALTLTDERGRSVTVTLPAPLQSARNRALDEVVLR
EQLGKLGGTGYHLAALTTDLVGAGFLPVAQLNALRREAAEALTARRGQTPERRVVPRLDEVLRKGETPRPAAPTLPPRLH
VLVRTPEQLEAAIAERPDSITLDYLELYGLKSSVERVREAGLPVRVASPRILKPTEQNLQKFLLSLGADLLVRSGGLLEG
LQNTPDRPVLTGDFSLNAANVLTTRALLDLGLSRITPTHDLNARQITDLASLVGPERLEVIAYQHLPVFHTEHCVFCRFL
SEGTDYTNCGHPCEAHRVALRDERGIAHPVMADVGCRNTVFEGRPQIAAGHLEAWLAAGLRDFRLEFVHETSAQVREVIQ
AHRAFLARELDSAGLEAALQALSEQGVTEGSLFVPEGFDRLPALPVL

Sequences:

>Translated_847_residues
MARARVKPEVMSPVGGWPQLRAAVEAGADAVFFGVQSTRGQGFHARAKVGFTDEELPDIMRRLHERGVLGFVTFNILIFD
RELREAERQLMHLAESGVDAIIVQDHGVARLAHEICPDLPIHGSTQMSITSAEGAELARRFGASRVVLGRELSLRDIRRI
AAQTDMELETFVHGALCVSYSGQCFSSEAWGGRSANRGQCAQACRLPYDLLVDGQHRDLGDARYLLSPGDLYALHQVPEL
VQIGVDCLKIEGRYKDADFVALTTAAYRKAVDEAWAGLPLSVTPGEERDLEQVYSRGLGPHFLSGTNHQRVVRGRAPRHR
GVQVGTVRGTTARGVLVELSEEVKPGDGLVFDPANWRTPEGREEGGFLYGLWQGGRQVDGVRPGAVAELRFGRGAVDPAR
VRPGDPVWRTHDPALSARVRPLLEASDPVYTRPVTAHFRGHVGEVPALTLTDERGRSVTVTLPAPLQSARNRALDEVVLR
EQLGKLGGTGYHLAALTTDLVGAGFLPVAQLNALRREAAEALTARRGQTPERRVVPRLDEVLRKGETPRPAAPTLPPRLH
VLVRTPEQLEAAIAERPDSITLDYLELYGLKSSVERVREAGLPVRVASPRILKPTEQNLQKFLLSLGADLLVRSGGLLEG
LQNTPDRPVLTGDFSLNAANVLTTRALLDLGLSRITPTHDLNARQITDLASLVGPERLEVIAYQHLPVFHTEHCVFCRFL
SEGTDYTNCGHPCEAHRVALRDERGIAHPVMADVGCRNTVFEGRPQIAAGHLEAWLAAGLRDFRLEFVHETSAQVREVIQ
AHRAFLARELDSAGLEAALQALSEQGVTEGSLFVPEGFDRLPALPVL
>Mature_846_residues
ARARVKPEVMSPVGGWPQLRAAVEAGADAVFFGVQSTRGQGFHARAKVGFTDEELPDIMRRLHERGVLGFVTFNILIFDR
ELREAERQLMHLAESGVDAIIVQDHGVARLAHEICPDLPIHGSTQMSITSAEGAELARRFGASRVVLGRELSLRDIRRIA
AQTDMELETFVHGALCVSYSGQCFSSEAWGGRSANRGQCAQACRLPYDLLVDGQHRDLGDARYLLSPGDLYALHQVPELV
QIGVDCLKIEGRYKDADFVALTTAAYRKAVDEAWAGLPLSVTPGEERDLEQVYSRGLGPHFLSGTNHQRVVRGRAPRHRG
VQVGTVRGTTARGVLVELSEEVKPGDGLVFDPANWRTPEGREEGGFLYGLWQGGRQVDGVRPGAVAELRFGRGAVDPARV
RPGDPVWRTHDPALSARVRPLLEASDPVYTRPVTAHFRGHVGEVPALTLTDERGRSVTVTLPAPLQSARNRALDEVVLRE
QLGKLGGTGYHLAALTTDLVGAGFLPVAQLNALRREAAEALTARRGQTPERRVVPRLDEVLRKGETPRPAAPTLPPRLHV
LVRTPEQLEAAIAERPDSITLDYLELYGLKSSVERVREAGLPVRVASPRILKPTEQNLQKFLLSLGADLLVRSGGLLEGL
QNTPDRPVLTGDFSLNAANVLTTRALLDLGLSRITPTHDLNARQITDLASLVGPERLEVIAYQHLPVFHTEHCVFCRFLS
EGTDYTNCGHPCEAHRVALRDERGIAHPVMADVGCRNTVFEGRPQIAAGHLEAWLAAGLRDFRLEFVHETSAQVREVIQA
HRAFLARELDSAGLEAALQALSEQGVTEGSLFVPEGFDRLPALPVL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=536, Percent_Identity=34.1417910447761, Blast_Score=238, Evalue=1e-63,
Organism=Escherichia coli, GI1788397, Length=374, Percent_Identity=31.8181818181818, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1789548, Length=333, Percent_Identity=28.8288288288288, Blast_Score=114, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 92613; Mature: 92481

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARARVKPEVMSPVGGWPQLRAAVEAGADAVFFGVQSTRGQGFHARAKVGFTDEELPDIM
CCCCCCCCHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHH
RRLHERGVLGFVTFNILIFDRELREAERQLMHLAESGVDAIIVQDHGVARLAHEICPDLP
HHHHHCCCEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCC
IHGSTQMSITSAEGAELARRFGASRVVLGRELSLRDIRRIAAQTDMELETFVHGALCVSY
CCCCCEEEEECCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHEEEE
SGQCFSSEAWGGRSANRGQCAQACRLPYDLLVDGQHRDLGDARYLLSPGDLYALHQVPEL
CCCEECCCCCCCCCCCCCHHHHHHCCCHHEEECCCCCCCCCCEEEECCCCCHHHHHHHHH
VQIGVDCLKIEGRYKDADFVALTTAAYRKAVDEAWAGLPLSVTPGEERDLEQVYSRGLGP
HHHCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCC
HFLSGTNHQRVVRGRAPRHRGVQVGTVRGTTARGVLVELSEEVKPGDGLVFDPANWRTPE
HHCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEHHHCCCCCCEEECCCCCCCCC
GREEGGFLYGLWQGGRQVDGVRPGAVAELRFGRGAVDPARVRPGDPVWRTHDPALSARVR
CCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
PLLEASDPVYTRPVTAHFRGHVGEVPALTLTDERGRSVTVTLPAPLQSARNRALDEVVLR
HHHCCCCCCEECCCHHHHCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHH
EQLGKLGGTGYHLAALTTDLVGAGFLPVAQLNALRREAAEALTARRGQTPERRVVPRLDE
HHHHHHCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VLRKGETPRPAAPTLPPRLHVLVRTPEQLEAAIAERPDSITLDYLELYGLKSSVERVREA
HHHCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHHHHHC
GLPVRVASPRILKPTEQNLQKFLLSLGADLLVRSGGLLEGLQNTPDRPVLTGDFSLNAAN
CCCEEECCCCCCCCHHHHHHHHHHHHCHHHHHHCCCHHHHHCCCCCCCEEEECCCCCHHH
VLTTRALLDLGLSRITPTHDLNARQITDLASLVGPERLEVIAYQHLPVFHTEHCVFCRFL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCEEECCHHHHHHHH
SEGTDYTNCGHPCEAHRVALRDERGIAHPVMADVGCRNTVFEGRPQIAAGHLEAWLAAGL
HCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCH
RDFRLEFVHETSAQVREVIQAHRAFLARELDSAGLEAALQALSEQGVTEGSLFVPEGFDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCC
LPALPVL
CCCCCCC
>Mature Secondary Structure 
ARARVKPEVMSPVGGWPQLRAAVEAGADAVFFGVQSTRGQGFHARAKVGFTDEELPDIM
CCCCCCCHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHH
RRLHERGVLGFVTFNILIFDRELREAERQLMHLAESGVDAIIVQDHGVARLAHEICPDLP
HHHHHCCCEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCC
IHGSTQMSITSAEGAELARRFGASRVVLGRELSLRDIRRIAAQTDMELETFVHGALCVSY
CCCCCEEEEECCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHEEEE
SGQCFSSEAWGGRSANRGQCAQACRLPYDLLVDGQHRDLGDARYLLSPGDLYALHQVPEL
CCCEECCCCCCCCCCCCCHHHHHHCCCHHEEECCCCCCCCCCEEEECCCCCHHHHHHHHH
VQIGVDCLKIEGRYKDADFVALTTAAYRKAVDEAWAGLPLSVTPGEERDLEQVYSRGLGP
HHHCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCC
HFLSGTNHQRVVRGRAPRHRGVQVGTVRGTTARGVLVELSEEVKPGDGLVFDPANWRTPE
HHCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEHHHCCCCCCEEECCCCCCCCC
GREEGGFLYGLWQGGRQVDGVRPGAVAELRFGRGAVDPARVRPGDPVWRTHDPALSARVR
CCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
PLLEASDPVYTRPVTAHFRGHVGEVPALTLTDERGRSVTVTLPAPLQSARNRALDEVVLR
HHHCCCCCCEECCCHHHHCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHH
EQLGKLGGTGYHLAALTTDLVGAGFLPVAQLNALRREAAEALTARRGQTPERRVVPRLDE
HHHHHHCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VLRKGETPRPAAPTLPPRLHVLVRTPEQLEAAIAERPDSITLDYLELYGLKSSVERVREA
HHHCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHHHHHC
GLPVRVASPRILKPTEQNLQKFLLSLGADLLVRSGGLLEGLQNTPDRPVLTGDFSLNAAN
CCCEEECCCCCCCCHHHHHHHHHHHHCHHHHHHCCCHHHHHCCCCCCCEEEECCCCCHHH
VLTTRALLDLGLSRITPTHDLNARQITDLASLVGPERLEVIAYQHLPVFHTEHCVFCRFL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCEEECCHHHHHHHH
SEGTDYTNCGHPCEAHRVALRDERGIAHPVMADVGCRNTVFEGRPQIAAGHLEAWLAAGL
HCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCH
RDFRLEFVHETSAQVREVIQAHRAFLARELDSAGLEAALQALSEQGVTEGSLFVPEGFDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCC
LPALPVL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]