| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is cdsA [H]
Identifier: 94985149
GI number: 94985149
Start: 1117384
End: 1118214
Strand: Reverse
Name: cdsA [H]
Synonym: Dgeo_1045
Alternate gene names: 94985149
Gene position: 1118214-1117384 (Counterclockwise)
Preceding gene: 94985150
Following gene: 94985148
Centisome position: 45.32
GC content: 63.9
Gene sequence:
>831_bases GTGGAATCGCTGAGCACCCGCGTCCTCACCTCAGTGGTGGGCTTTGCCATCATCAGCGTGGTCGTGTGGATCGGGTGGAT TGCCATGGTTCCCCTGCTGGTGTTCGTGTCTGTGATGGGCCTCTCGGAGTACATCCGGATGCTTGACCGCAACGATATCG ACGTGCGGCGCATCTCGCTGGGGATCTTCGGGACGGCGCTGATTCTGGCGAGCCTGCCCATGCTCCCGGAGGCACCCTGG CTGGGCGGGTCGTGGCGCGAGGTGGTGCTGACGATTGCTCTTGGGTACCTGCTGGTGATGGAGGTCATGCGGCCCGGCGA GCGCCCGCTCGAGCGCATCGTGTACTCGCTCTTCGGGCTGCTGTACATTCCCTGGCTGCTGGGGTACTTCCTGCTGCTGC GCTACACACCGGACGCGACCCAGGGCCTGCTGTACTTCGCGCTGCCGCTGCTGGCGACCTTTGCGGCGGATATCGGCGGG TACTTCGGCGGCCATTTCTTCGGCAGGCGCAAGCTCGCGCCGGAGATCAGCCCCGGCAAGACCGTTGAGGGAGCCGTCAG CGGCTTCGCCTTCAGCTTCATGACGGTGCTGGTCTTTTCACAGCTGACTCACCTTGGCTCCCCGCTCGAAGCCCTGCTGT ACTCCATCCTGGTGGCGAGCGCCTCTCAGCTGGGCGATCTGGCCGAGAGTCTGCTGAAGCGCGCCCTAAAGACCAAGGAC AGCGGCAACAGCCTGCCCGGGCACGGCGGCTTTCTCGATCGCCTGGACTCGCTGCTGTTTGCCGTTCCGGCGACGTATCT GTTTTTGAATATCAGCGTGTTTACGCGGTGA
Upstream 100 bases:
>100_bases CCAGACAACGTGACCGCCGGGACCTCCGGCGGCGCGTTCTTATAGGCCGCGGGGGGTGGGACAACACCTTGGCGTCGCGA TCTTCCGCCAGGAGCCAGCG
Downstream 100 bases:
>100_bases GCGCGAGGAGCTGCTCTGAGCTTTTTTCACCCCTTCCCACCATCCGTCCGGCGCGTATGCGCCATCCTGTCTCCAATGAA GCTGACGGTTCTGGGCAGTA
Product: phosphatidate cytidylyltransferase
Products: NA
Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MESLSTRVLTSVVGFAIISVVVWIGWIAMVPLLVFVSVMGLSEYIRMLDRNDIDVRRISLGIFGTALILASLPMLPEAPW LGGSWREVVLTIALGYLLVMEVMRPGERPLERIVYSLFGLLYIPWLLGYFLLLRYTPDATQGLLYFALPLLATFAADIGG YFGGHFFGRRKLAPEISPGKTVEGAVSGFAFSFMTVLVFSQLTHLGSPLEALLYSILVASASQLGDLAESLLKRALKTKD SGNSLPGHGGFLDRLDSLLFAVPATYLFLNISVFTR
Sequences:
>Translated_276_residues MESLSTRVLTSVVGFAIISVVVWIGWIAMVPLLVFVSVMGLSEYIRMLDRNDIDVRRISLGIFGTALILASLPMLPEAPW LGGSWREVVLTIALGYLLVMEVMRPGERPLERIVYSLFGLLYIPWLLGYFLLLRYTPDATQGLLYFALPLLATFAADIGG YFGGHFFGRRKLAPEISPGKTVEGAVSGFAFSFMTVLVFSQLTHLGSPLEALLYSILVASASQLGDLAESLLKRALKTKD SGNSLPGHGGFLDRLDSLLFAVPATYLFLNISVFTR >Mature_276_residues MESLSTRVLTSVVGFAIISVVVWIGWIAMVPLLVFVSVMGLSEYIRMLDRNDIDVRRISLGIFGTALILASLPMLPEAPW LGGSWREVVLTIALGYLLVMEVMRPGERPLERIVYSLFGLLYIPWLLGYFLLLRYTPDATQGLLYFALPLLATFAADIGG YFGGHFFGRRKLAPEISPGKTVEGAVSGFAFSFMTVLVFSQLTHLGSPLEALLYSILVASASQLGDLAESLLKRALKTKD SGNSLPGHGGFLDRLDSLLFAVPATYLFLNISVFTR
Specific function: Phospholipid biosynthesis. [C]
COG id: COG0575
COG function: function code I; CDP-diglyceride synthetase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI87081696, Length=187, Percent_Identity=37.9679144385027, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787677, Length=161, Percent_Identity=36.0248447204969, Blast_Score=98, Evalue=7e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: =2.7.7.41 [H]
Molecular weight: Translated: 30259; Mature: 30259
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: PS01315 CDS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESLSTRVLTSVVGFAIISVVVWIGWIAMVPLLVFVSVMGLSEYIRMLDRNDIDVRRISL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH GIFGTALILASLPMLPEAPWLGGSWREVVLTIALGYLLVMEVMRPGERPLERIVYSLFGL HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH LYIPWLLGYFLLLRYTPDATQGLLYFALPLLATFAADIGGYFGGHFFGRRKLAPEISPGK HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC TVEGAVSGFAFSFMTVLVFSQLTHLGSPLEALLYSILVASASQLGDLAESLLKRALKTKD CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SGNSLPGHGGFLDRLDSLLFAVPATYLFLNISVFTR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MESLSTRVLTSVVGFAIISVVVWIGWIAMVPLLVFVSVMGLSEYIRMLDRNDIDVRRISL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH GIFGTALILASLPMLPEAPWLGGSWREVVLTIALGYLLVMEVMRPGERPLERIVYSLFGL HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH LYIPWLLGYFLLLRYTPDATQGLLYFALPLLATFAADIGGYFGGHFFGRRKLAPEISPGK HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC TVEGAVSGFAFSFMTVLVFSQLTHLGSPLEALLYSILVASASQLGDLAESLLKRALKTKD CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SGNSLPGHGGFLDRLDSLLFAVPATYLFLNISVFTR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]