Click here to switch to the map view.

The map label for this gene is ugpB [H]

Identifier: 94984794

GI number: 94984794

Start: 744989

End: 746212

Strand: Reverse

Name: ugpB [H]

Synonym: Dgeo_0687

Alternate gene names: 94984794

Gene position: 746212-744989 (Counterclockwise)

Preceding gene: 94984795

Following gene: 94984793

Centisome position: 30.25

GC content: 61.03

Gene sequence:

>1224_bases
ATGAAGAAGGTCCTGATCACGGCGGCCCTGCTGACCCTCGGCAGCGCCAGCGCGCAAAAAACGCAGATGGAGTTTTGGAC
GATCGCTCTCGCGCCCCTGTTCAACGATGAGATGAACCGGCTGGTGGCGCAGTTCGAGAAGGAAAACCCGAACGTGGAAC
TGAAGTGGGTGGATGTACCCGCCTCGGCCATCGAGCAGAAGCTGCTGGCCGCCATCGCCTCGGGCCGTCCGCCCGCCGCC
GTCAACCTGTCGTCCGACATGGTGGTGAAGATGGTGGACCAGGGAGCGCTGGAACCGCTGACGCTGACTGACGCGCAGAA
GAAGGTGTACTTCCCGTCGCCCCTGAATACCTTTACCTTCGACGGCAAGGTGATGGGCGTGCCCTGGTACTGGTCACCCA
AGGTGGTGGCCTACAACACCGAGATTTTCCGCAAGGCGGGCCTGGATCCCAATAACCCGCCGCGCACCATTCAGACGTTG
ATCGCCGCGGCCAAGCAAATCAAGGACAAGACCGGCCTCTACGGCTTCATGCCGAACATCAACAACCTGAACATGCTGTA
CCTGTTCCAGGAGGCAGGCCTGCCCGTCCTCAAGGGGGGCCGTGCGGTCTTCAATAGCCCCGAACACGTCAAGCTGCTCC
AGACCTATGTGGACCTCTACAAGCAGGGCTATATCCCGGAAGACACCATGCGCCGGGGCTTCACCGCGGCAACTGAGCTG
TACTCGGCGGGCAAGCTGGGCATGCTGATCACCGGCCCACAGTTCATCCTGCGCGTGGCGAACGACAACCGGGACATCTA
CAACGTGACCAAGGTTGCGCCGTACCCGATCAATCTGGCGGGAAACGTGATCCACACCGGGCTCATGGGCTTCGTGGTGC
CCAAGGGCGTAAAGGACAAGGCGCTCGCGCAGAAGCTGGCCCTGTTCCTCACGAACGACGTGAACCAGCTCCAGTTTAGC
CGAGTCACCAAGACGACTTTCCCCAGCACCGTAAAGGCCAGCACCGACAAGTTCTTCAAGCAGGGCGGCCAGAATGCCAT
CGACCAGGGGAGGCTGGTCGCCAGCACAGAGTTGAAGAAGGCCAAGGACCTCACGCTGGTCTACCCCGACGCCAGCCGGC
TGAACAAGGTCTTCAAGGACAACATCGAGGCTGCGATGGCCGGGCAGAAGAGCGCCAAGCAGGCGCTGGACGACATTGTG
AAGGCGTGGAACGCGAGCTTATAA

Upstream 100 bases:

>100_bases
GGACCGCTGCATGAGACCGGTCGCGGCTTCTCTCAGCCGGCGGCAGATTCCGCACGCTAGAGTTTGCTTTGCACCTCACA
TTCCGCCCGAAGGAGTCCCG

Downstream 100 bases:

>100_bases
GAGCCGAGGCAGCGGGCACGTGGAGAACGCGTCCCACGTGCTCGTGCTTTTTCCCTGTCTGCCTGCTTCAACCTACCCGA
ACCGACCGGCCGCGCTTTTT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKKVLITAALLTLGSASAQKTQMEFWTIALAPLFNDEMNRLVAQFEKENPNVELKWVDVPASAIEQKLLAAIASGRPPAA
VNLSSDMVVKMVDQGALEPLTLTDAQKKVYFPSPLNTFTFDGKVMGVPWYWSPKVVAYNTEIFRKAGLDPNNPPRTIQTL
IAAAKQIKDKTGLYGFMPNINNLNMLYLFQEAGLPVLKGGRAVFNSPEHVKLLQTYVDLYKQGYIPEDTMRRGFTAATEL
YSAGKLGMLITGPQFILRVANDNRDIYNVTKVAPYPINLAGNVIHTGLMGFVVPKGVKDKALAQKLALFLTNDVNQLQFS
RVTKTTFPSTVKASTDKFFKQGGQNAIDQGRLVASTELKKAKDLTLVYPDASRLNKVFKDNIEAAMAGQKSAKQALDDIV
KAWNASL

Sequences:

>Translated_407_residues
MKKVLITAALLTLGSASAQKTQMEFWTIALAPLFNDEMNRLVAQFEKENPNVELKWVDVPASAIEQKLLAAIASGRPPAA
VNLSSDMVVKMVDQGALEPLTLTDAQKKVYFPSPLNTFTFDGKVMGVPWYWSPKVVAYNTEIFRKAGLDPNNPPRTIQTL
IAAAKQIKDKTGLYGFMPNINNLNMLYLFQEAGLPVLKGGRAVFNSPEHVKLLQTYVDLYKQGYIPEDTMRRGFTAATEL
YSAGKLGMLITGPQFILRVANDNRDIYNVTKVAPYPINLAGNVIHTGLMGFVVPKGVKDKALAQKLALFLTNDVNQLQFS
RVTKTTFPSTVKASTDKFFKQGGQNAIDQGRLVASTELKKAKDLTLVYPDASRLNKVFKDNIEAAMAGQKSAKQALDDIV
KAWNASL
>Mature_407_residues
MKKVLITAALLTLGSASAQKTQMEFWTIALAPLFNDEMNRLVAQFEKENPNVELKWVDVPASAIEQKLLAAIASGRPPAA
VNLSSDMVVKMVDQGALEPLTLTDAQKKVYFPSPLNTFTFDGKVMGVPWYWSPKVVAYNTEIFRKAGLDPNNPPRTIQTL
IAAAKQIKDKTGLYGFMPNINNLNMLYLFQEAGLPVLKGGRAVFNSPEHVKLLQTYVDLYKQGYIPEDTMRRGFTAATEL
YSAGKLGMLITGPQFILRVANDNRDIYNVTKVAPYPINLAGNVIHTGLMGFVVPKGVKDKALAQKLALFLTNDVNQLQFS
RVTKTTFPSTVKASTDKFFKQGGQNAIDQGRLVASTELKKAKDLTLVYPDASRLNKVFKDNIEAAMAGQKSAKQALDDIV
KAWNASL

Specific function: Part of the ABC transporter complex ugpABCE involved in sn-glycerol-3-phosphate import [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 44809; Mature: 44809

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLITAALLTLGSASAQKTQMEFWTIALAPLFNDEMNRLVAQFEKENPNVELKWVDVP
CCHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
ASAIEQKLLAAIASGRPPAAVNLSSDMVVKMVDQGALEPLTLTDAQKKVYFPSPLNTFTF
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCEEECCCCCEEECCCCCCCEEE
DGKVMGVPWYWSPKVVAYNTEIFRKAGLDPNNPPRTIQTLIAAAKQIKDKTGLYGFMPNI
CCEEEECCEEECCEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCC
NNLNMLYLFQEAGLPVLKGGRAVFNSPEHVKLLQTYVDLYKQGYIPEDTMRRGFTAATEL
CCCEEEEEEECCCCCEEECCCHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHH
YSAGKLGMLITGPQFILRVANDNRDIYNVTKVAPYPINLAGNVIHTGLMGFVVPKGVKDK
HCCCCCCEEEECHHHEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHH
ALAQKLALFLTNDVNQLQFSRVTKTTFPSTVKASTDKFFKQGGQNAIDQGRLVASTELKK
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCEEEHHHHHC
AKDLTLVYPDASRLNKVFKDNIEAAMAGQKSAKQALDDIVKAWNASL
CCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKVLITAALLTLGSASAQKTQMEFWTIALAPLFNDEMNRLVAQFEKENPNVELKWVDVP
CCHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
ASAIEQKLLAAIASGRPPAAVNLSSDMVVKMVDQGALEPLTLTDAQKKVYFPSPLNTFTF
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCEEECCCCCEEECCCCCCCEEE
DGKVMGVPWYWSPKVVAYNTEIFRKAGLDPNNPPRTIQTLIAAAKQIKDKTGLYGFMPNI
CCEEEECCEEECCEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCC
NNLNMLYLFQEAGLPVLKGGRAVFNSPEHVKLLQTYVDLYKQGYIPEDTMRRGFTAATEL
CCCEEEEEEECCCCCEEECCCHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHH
YSAGKLGMLITGPQFILRVANDNRDIYNVTKVAPYPINLAGNVIHTGLMGFVVPKGVKDK
HCCCCCCEEEECHHHEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHH
ALAQKLALFLTNDVNQLQFSRVTKTTFPSTVKASTDKFFKQGGQNAIDQGRLVASTELKK
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCEEEHHHHHC
AKDLTLVYPDASRLNKVFKDNIEAAMAGQKSAKQALDDIVKAWNASL
CCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA