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The map label for this gene is ydcM [C]

Identifier: 94984787

GI number: 94984787

Start: 738195

End: 739439

Strand: Reverse

Name: ydcM [C]

Synonym: Dgeo_0680

Alternate gene names: 94984787

Gene position: 739439-738195 (Counterclockwise)

Preceding gene: 94984788

Following gene: 94984786

Centisome position: 29.97

GC content: 62.65

Gene sequence:

>1245_bases
ATGCACAGGGCGGAAACGGTCATTCTCAAACTGGCCGCCCCGTCTGCGAACAAACGAGCGTGGTTGTCTCAGACCGCTCA
GGCGTTCCGGGACGGGGTAGGGATGGTTTTGGGTGTGGCTGAATCCGAGAAGACGGGCAGTCGGGCCAAACTGCACAACG
CCTGCTACGCCGCCATCCGGGAGGAAACTGGCCTGCCCAGCGACTACGCCCGCATGGCGGTCAACGCAGGGGTTGCGCTG
GCCCGTTCCTACTGGGCCTTGCGAAAGGGAAAGCGCCGCCCCTCCTTTCCGAAGGTGGGGAAGTCTCAGGGCATTGGGCT
GGGCGTCAATGCCTACGCTGTCCTGAAACGCGGTGAGCGGTTCTTTCTGCGGGCCTCTACTGGGAAGCGTGGCTCCTACA
AGTGGTTTCCACTTTCCGTACCTGTGCATCTGGCCTCCAAACTTGAGTTCGTTCATGGCGACGCCAAGCTGTTCCAGCGT
GGAAGAGATTGGTTCGTCATGCTTCCGCTTCGCCTCCCCCACACGCCAGCCGTCCGTGACGGTGAACCTACGGTTCTGGG
CGTGGATTTGGGCGTGGTGAAGCTGATGACGGTGCTGACACCGGACGGCGTGAAGATTTGGAACGGTCTGCCTGTGCGCC
ATCGCCGGGAGAGATTCGCTGCTGTTCGTCGCCGCCTCCAGAGGCATCGCCGCACCGACCGCGTGAAGGCGCAGGGAGGG
CGTGAACGCCGCTGGATGTCGGGGCTGAACCACAAACTCAGTCGTGAACTCGTTGACCTTGCCCGCTTCTACAAGGACGC
GGTCATCGCCTTTGAGCAGCTGGACGGGATTCGTGACCGGGTACGGGGCAGCAAGAAGTTCAACCGGATGATGAGCAGCT
GGACGTTCCGTGACCTCGTGGACAAGGTGCGGTACAAGGCGGAAGCGGCTGGGGTGGGCGTGGTCTTCGTTGACCCGCGC
AAGACTTCCCAGACCTGCCACCGCTGCGGACATGCCACGCGGAGTAACCGGACGTCTCAGGCTGAGTTTCGATGTGTGAA
CTGCGGATTCAGGACGAATGCGGACTGGAACGCGGCCACCAACATCGCTGCTGCCGGGCTGCGTGCCTTGCAGCAGGGGC
CGACTGACACGGCCCGCTCTGCTCACGCAGAGCAGGCGTCGTCCTCGTTGACGGCGCTCGATGGAGTAAAGGTGCGCGAG
GCGCAAGTTTCGCACACAGACTCCAACCTCGTAAGCCCCGCGTAG

Upstream 100 bases:

>100_bases
CTCCGAGGATGCCCCGGTTTTCAAGCCGGGGAGGAATCGGTGCGCCACCGTAGGTGGCGATGCCCTTTGCTCTGCTGAAG
CCTTGGGCTATCCTATGTTC

Downstream 100 bases:

>100_bases
GGGAACCCCCGGTCTTCAGGCCGGGGAGGATGTCAGTGCCCGCCATGCAGGCCCATTTCGCTGGGCTGGCGAACGCCGAC
GTGCTGGTCCGGCTGACGGT

Product: transposase, IS605 OrfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MHRAETVILKLAAPSANKRAWLSQTAQAFRDGVGMVLGVAESEKTGSRAKLHNACYAAIREETGLPSDYARMAVNAGVAL
ARSYWALRKGKRRPSFPKVGKSQGIGLGVNAYAVLKRGERFFLRASTGKRGSYKWFPLSVPVHLASKLEFVHGDAKLFQR
GRDWFVMLPLRLPHTPAVRDGEPTVLGVDLGVVKLMTVLTPDGVKIWNGLPVRHRRERFAAVRRRLQRHRRTDRVKAQGG
RERRWMSGLNHKLSRELVDLARFYKDAVIAFEQLDGIRDRVRGSKKFNRMMSSWTFRDLVDKVRYKAEAAGVGVVFVDPR
KTSQTCHRCGHATRSNRTSQAEFRCVNCGFRTNADWNAATNIAAAGLRALQQGPTDTARSAHAEQASSSLTALDGVKVRE
AQVSHTDSNLVSPA

Sequences:

>Translated_414_residues
MHRAETVILKLAAPSANKRAWLSQTAQAFRDGVGMVLGVAESEKTGSRAKLHNACYAAIREETGLPSDYARMAVNAGVAL
ARSYWALRKGKRRPSFPKVGKSQGIGLGVNAYAVLKRGERFFLRASTGKRGSYKWFPLSVPVHLASKLEFVHGDAKLFQR
GRDWFVMLPLRLPHTPAVRDGEPTVLGVDLGVVKLMTVLTPDGVKIWNGLPVRHRRERFAAVRRRLQRHRRTDRVKAQGG
RERRWMSGLNHKLSRELVDLARFYKDAVIAFEQLDGIRDRVRGSKKFNRMMSSWTFRDLVDKVRYKAEAAGVGVVFVDPR
KTSQTCHRCGHATRSNRTSQAEFRCVNCGFRTNADWNAATNIAAAGLRALQQGPTDTARSAHAEQASSSLTALDGVKVRE
AQVSHTDSNLVSPA
>Mature_414_residues
MHRAETVILKLAAPSANKRAWLSQTAQAFRDGVGMVLGVAESEKTGSRAKLHNACYAAIREETGLPSDYARMAVNAGVAL
ARSYWALRKGKRRPSFPKVGKSQGIGLGVNAYAVLKRGERFFLRASTGKRGSYKWFPLSVPVHLASKLEFVHGDAKLFQR
GRDWFVMLPLRLPHTPAVRDGEPTVLGVDLGVVKLMTVLTPDGVKIWNGLPVRHRRERFAAVRRRLQRHRRTDRVKAQGG
RERRWMSGLNHKLSRELVDLARFYKDAVIAFEQLDGIRDRVRGSKKFNRMMSSWTFRDLVDKVRYKAEAAGVGVVFVDPR
KTSQTCHRCGHATRSNRTSQAEFRCVNCGFRTNADWNAATNIAAAGLRALQQGPTDTARSAHAEQASSSLTALDGVKVRE
AQVSHTDSNLVSPA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=221, Percent_Identity=28.5067873303167, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010095 [H]

Pfam domain/function: PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46064; Mature: 46064

Theoretical pI: Translated: 11.55; Mature: 11.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRAETVILKLAAPSANKRAWLSQTAQAFRDGVGMVLGVAESEKTGSRAKLHNACYAAIR
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
EETGLPSDYARMAVNAGVALARSYWALRKGKRRPSFPKVGKSQGIGLGVNAYAVLKRGER
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCE
FFLRASTGKRGSYKWFPLSVPVHLASKLEFVHGDAKLFQRGRDWFVMLPLRLPHTPAVRD
EEEEECCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHCCCCEEEEEEEECCCCCCCCC
GEPTVLGVDLGVVKLMTVLTPDGVKIWNGLPVRHRRERFAAVRRRLQRHRRTDRVKAQGG
CCCCEEEECHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RERRWMSGLNHKLSRELVDLARFYKDAVIAFEQLDGIRDRVRGSKKFNRMMSSWTFRDLV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHH
DKVRYKAEAAGVGVVFVDPRKTSQTCHRCGHATRSNRTSQAEFRCVNCGFRTNADWNAAT
HHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
NIAAAGLRALQQGPTDTARSAHAEQASSSLTALDGVKVREAQVSHTDSNLVSPA
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCCCEEEHHHHCCCCCCCCCCC
>Mature Secondary Structure
MHRAETVILKLAAPSANKRAWLSQTAQAFRDGVGMVLGVAESEKTGSRAKLHNACYAAIR
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
EETGLPSDYARMAVNAGVALARSYWALRKGKRRPSFPKVGKSQGIGLGVNAYAVLKRGER
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCE
FFLRASTGKRGSYKWFPLSVPVHLASKLEFVHGDAKLFQRGRDWFVMLPLRLPHTPAVRD
EEEEECCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHCCCCEEEEEEEECCCCCCCCC
GEPTVLGVDLGVVKLMTVLTPDGVKIWNGLPVRHRRERFAAVRRRLQRHRRTDRVKAQGG
CCCCEEEECHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RERRWMSGLNHKLSRELVDLARFYKDAVIAFEQLDGIRDRVRGSKKFNRMMSSWTFRDLV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHH
DKVRYKAEAAGVGVVFVDPRKTSQTCHRCGHATRSNRTSQAEFRCVNCGFRTNADWNAAT
HHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
NIAAAGLRALQQGPTDTARSAHAEQASSSLTALDGVKVREAQVSHTDSNLVSPA
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCCCEEEHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]