Click here to switch to the map view.

The map label for this gene is cspA [H]

Identifier: 94984745

GI number: 94984745

Start: 694567

End: 694830

Strand: Reverse

Name: cspA [H]

Synonym: Dgeo_0638

Alternate gene names: 94984745

Gene position: 694830-694567 (Counterclockwise)

Preceding gene: 94984746

Following gene: 94984743

Centisome position: 28.16

GC content: 59.09

Gene sequence:

>264_bases
ATGGCTGTAGGTAAAGTGAAGTGGTTCAACGCGGAAAAGGGCTATGGGTTCATCGAGACGGAAGGCAGCGAGGACGTGTT
TGCACACTTCAGCGCCATTCAGGCTCAGGGCTTCAAGAAGCTGAACGAGGGCGACGAGGTCGAATTTGAAATCGAACCTG
GTCAACGTGGCAAGGGTCCGCAAGCGAGAAACATCGTCGTGACCAAGGCCGCCCCGGCTCCCGCCTATGGCGACCGGCCT
GCCCGCCGCAACGACCGCTGGTAA

Upstream 100 bases:

>100_bases
CATAGTGACTGAGTCATTTTCCCAGCAGGTCCTATCCAAGAGGCGCGCCCGGTGAAATACGGCGTGCCTCTTTTTGCTGA
GGAAGGGCAAGGAGTTGAAG

Downstream 100 bases:

>100_bases
ACCCCCATCCTCGCGCAACCCAAAGAGGTCCTCTCCGGACCTCTTTTATCTTTTGATCTTCTGTGCTCCCTTACTTCAGC
GCCCGCCGTAATCCTGCGGC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MAVGKVKWFNAEKGYGFIETEGSEDVFAHFSAIQAQGFKKLNEGDEVEFEIEPGQRGKGPQARNIVVTKAAPAPAYGDRP
ARRNDRW

Sequences:

>Translated_87_residues
MAVGKVKWFNAEKGYGFIETEGSEDVFAHFSAIQAQGFKKLNEGDEVEFEIEPGQRGKGPQARNIVVTKAAPAPAYGDRP
ARRNDRW
>Mature_86_residues
AVGKVKWFNAEKGYGFIETEGSEDVFAHFSAIQAQGFKKLNEGDEVEFEIEPGQRGKGPQARNIVVTKAAPAPAYGDRPA
RRNDRW

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=59.0909090909091, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=62.5, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=62.5, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=56.0606060606061, Blast_Score=75, Evalue=6e-16,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=58.4615384615385, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=60, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787107, Length=74, Percent_Identity=44.5945945945946, Blast_Score=62, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 9669; Mature: 9538

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVGKVKWFNAEKGYGFIETEGSEDVFAHFSAIQAQGFKKLNEGDEVEFEIEPGQRGKGP
CCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
QARNIVVTKAAPAPAYGDRPARRNDRW
CCCEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVGKVKWFNAEKGYGFIETEGSEDVFAHFSAIQAQGFKKLNEGDEVEFEIEPGQRGKGP
CCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
QARNIVVTKAAPAPAYGDRPARRNDRW
CCCEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]