| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is recG [H]
Identifier: 94984699
GI number: 94984699
Start: 630974
End: 632722
Strand: Reverse
Name: recG [H]
Synonym: Dgeo_0592
Alternate gene names: 94984699
Gene position: 632722-630974 (Counterclockwise)
Preceding gene: 94984700
Following gene: 94984698
Centisome position: 25.65
GC content: 69.47
Gene sequence:
>1749_bases GTGACGCTGGACTCCGCCGAAGCAATTTCCCCCCTGGGTGTGCTGCCCCCGCCGGGGCCATCCTGCGTGCATCTGCCGCT CAACGTCACCCCGCAGGAACTGGCGCGCTATGCGGTGGGTCTGGCCAACGCGCGGGGCGGCACAGTCGTGGTTGGGGCCG ACGCGCCGAAAGCCCAGGGCACCGGCGAGCGTGACGCGGGCGAACTTCATCCGCTGATGGTGACCCACGCGATTTTTGAG CTGTCCGGTGGTCGGCTGACGGTGAACGTGCAGCACTGGCGACAGCCCGGGGGGGCAAAGGTTCTGGTGGTCTTCGTCCC GCAGGCGCCCTATGTGTTGGCCGCGCCCGACGGGGCAGTGCTGGCGTGGGACGGAAGCCACCTGGTGCCGGTCACGCCGG CGCAGAGCGAACCTGCACCGCAGCCCGACTATACGGCGGTGGTGCCGCCCGACGCCTCACTGGCTGATCTCGATCCCCAC GAGGTTGCGCGGCTGCGGGGCCTGGGGCAGAAGGGTGGCCTCTCACATCTCCCCGACCTCGACTTCCTGCGCGAGTTGGG GCTTCTTGTCCCCAGCGGCGGCGCGCTGCGGCCCACGCTGGCGGGCATCCTGCTGGCAGGCACCCCAGCGGCCCTCAAGG CGCACGTGCCGCAGGCCGAAGTCTGCTTCTACCACCACCAGACCCCCGACGTGGAGTTCCAATTTCGGGAAGACTTGCTG CGGCCCATTCCCGCGCTCCTCACCCGCCTAGCTGAACTGATCCAGGCCAGGAACCGTTTCACGCCGGTGCAGGTGGGCTT ATTTCGCATCGAGGTCTGGGACCAGGACGAGGCGGTGTACCGCGAGGCCCTGCTCAACGCCCTGACGCACCGCGACTACA CGCTGCGCGACGCCGTTCATGTCCACCACTACCCCGACCGGCTGGAGATCATGAATCCGGGGGGGCTGCCGGGCGGCATC ACGCCGGGGAACATCTTGCGGCACCAGCCCAAGCGCCGCAATCCGCTGCTGGCCGAGGTGCTCGCGCGGCTAGGCCTGGT GGAGCGCGCGGGCGTGGGCGTGGACAAGATGTATCAACTCATGCTGCGACACGGCAAGGAACCGCCCGAATACACCACCT ATCCCGACGCCGTGACCCTCACCCTGCATTCGCCGGGCTTCGACGCCGAATTTGTGCGCTTTGTGGCCCGCAAGCAAGAA GAGATGCAGACCCTCTCGCTGGACATGTTGATTGTCCTCTCGCTGCTGGCCCGCGAGGGGGAAGCGACCCGTGCGGGGCT GGCCCGCGCCCTGCAACTTCCCGAGGACCGCACGCCAAGACTGCTGCGCAGCATGGAGGAACACCGCCTGATCACCCGCT CGGGTGTCGGGCGCGGCATCGCCTACATCCTCTCGGAAGAGGTGCAGCGGGCGCTGGGCCGCGAGCCGAAACGGCCTGTT CCCCCTCCATCTGAGACAGCCTCGGTCCCGTCTGTCCGCCAGCCCCGCTTTTCCCGCTCAGGCCCCGATCTCGCCAGTGG CCCCACCCCCGCCGAGGTCCGCGCCGTCGCGCTGGCCCTGGCGCGCGAACAGGGCCGGGTGCGCAACCGCGACCTGCGCG ACGCCTGTGACCTGAACACCCAGCAGGCGTGGCGGGTGCTGCGCCGCCTGGTGCTGGAAGGACACCTGGTCAAGCGCGGC CGCGGGACACGCGACGCCGCCTATGAGCTGAGTTCGCCCCCGGCACCGCCCGCGGGGCGCAGCGACTGA
Upstream 100 bases:
>100_bases TGGACAGCGAGGGGAAGGTGAGCGGGGTGGAACGGTTCTGGGCGGTCAGGGGTGTGGGCTGACGGCTGAAAGCTGACCGC TGCCCTTATACTGCTCCTTT
Downstream 100 bases:
>100_bases GGACCGCAAAAGGCCTCCAACAACCTCAACGCCTGCGCCCCTTGGCGATCAGACGGCTTTCTTCCCCACTTCCCAGCGTG AACAGATTGACAGCCCCAAA
Product: putative transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 582; Mature: 581
Protein sequence:
>582_residues MTLDSAEAISPLGVLPPPGPSCVHLPLNVTPQELARYAVGLANARGGTVVVGADAPKAQGTGERDAGELHPLMVTHAIFE LSGGRLTVNVQHWRQPGGAKVLVVFVPQAPYVLAAPDGAVLAWDGSHLVPVTPAQSEPAPQPDYTAVVPPDASLADLDPH EVARLRGLGQKGGLSHLPDLDFLRELGLLVPSGGALRPTLAGILLAGTPAALKAHVPQAEVCFYHHQTPDVEFQFREDLL RPIPALLTRLAELIQARNRFTPVQVGLFRIEVWDQDEAVYREALLNALTHRDYTLRDAVHVHHYPDRLEIMNPGGLPGGI TPGNILRHQPKRRNPLLAEVLARLGLVERAGVGVDKMYQLMLRHGKEPPEYTTYPDAVTLTLHSPGFDAEFVRFVARKQE EMQTLSLDMLIVLSLLAREGEATRAGLARALQLPEDRTPRLLRSMEEHRLITRSGVGRGIAYILSEEVQRALGREPKRPV PPPSETASVPSVRQPRFSRSGPDLASGPTPAEVRAVALALAREQGRVRNRDLRDACDLNTQQAWRVLRRLVLEGHLVKRG RGTRDAAYELSSPPAPPAGRSD
Sequences:
>Translated_582_residues MTLDSAEAISPLGVLPPPGPSCVHLPLNVTPQELARYAVGLANARGGTVVVGADAPKAQGTGERDAGELHPLMVTHAIFE LSGGRLTVNVQHWRQPGGAKVLVVFVPQAPYVLAAPDGAVLAWDGSHLVPVTPAQSEPAPQPDYTAVVPPDASLADLDPH EVARLRGLGQKGGLSHLPDLDFLRELGLLVPSGGALRPTLAGILLAGTPAALKAHVPQAEVCFYHHQTPDVEFQFREDLL RPIPALLTRLAELIQARNRFTPVQVGLFRIEVWDQDEAVYREALLNALTHRDYTLRDAVHVHHYPDRLEIMNPGGLPGGI TPGNILRHQPKRRNPLLAEVLARLGLVERAGVGVDKMYQLMLRHGKEPPEYTTYPDAVTLTLHSPGFDAEFVRFVARKQE EMQTLSLDMLIVLSLLAREGEATRAGLARALQLPEDRTPRLLRSMEEHRLITRSGVGRGIAYILSEEVQRALGREPKRPV PPPSETASVPSVRQPRFSRSGPDLASGPTPAEVRAVALALAREQGRVRNRDLRDACDLNTQQAWRVLRRLVLEGHLVKRG RGTRDAAYELSSPPAPPAGRSD >Mature_581_residues TLDSAEAISPLGVLPPPGPSCVHLPLNVTPQELARYAVGLANARGGTVVVGADAPKAQGTGERDAGELHPLMVTHAIFEL SGGRLTVNVQHWRQPGGAKVLVVFVPQAPYVLAAPDGAVLAWDGSHLVPVTPAQSEPAPQPDYTAVVPPDASLADLDPHE VARLRGLGQKGGLSHLPDLDFLRELGLLVPSGGALRPTLAGILLAGTPAALKAHVPQAEVCFYHHQTPDVEFQFREDLLR PIPALLTRLAELIQARNRFTPVQVGLFRIEVWDQDEAVYREALLNALTHRDYTLRDAVHVHHYPDRLEIMNPGGLPGGIT PGNILRHQPKRRNPLLAEVLARLGLVERAGVGVDKMYQLMLRHGKEPPEYTTYPDAVTLTLHSPGFDAEFVRFVARKQEE MQTLSLDMLIVLSLLAREGEATRAGLARALQLPEDRTPRLLRSMEEHRLITRSGVGRGIAYILSEEVQRALGREPKRPVP PPSETASVPSVRQPRFSRSGPDLASGPTPAEVRAVALALAREQGRVRNRDLRDACDLNTQQAWRVLRRLVLEGHLVKRGR GTRDAAYELSSPPAPPAGRSD
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG2865
COG function: function code K; Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase ATP-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 63357; Mature: 63225
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLDSAEAISPLGVLPPPGPSCVHLPLNVTPQELARYAVGLANARGGTVVVGADAPKAQG CCCCCCHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC TGERDAGELHPLMVTHAIFELSGGRLTVNVQHWRQPGGAKVLVVFVPQAPYVLAAPDGAV CCCCCCCCCCHHHHHHHHHHCCCCEEEEEEHHHCCCCCCEEEEEEECCCCEEEECCCCEE LAWDGSHLVPVTPAQSEPAPQPDYTAVVPPDASLADLDPHEVARLRGLGQKGGLSHLPDL EEECCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCH DFLRELGLLVPSGGALRPTLAGILLAGTPAALKAHVPQAEVCFYHHQTPDVEFQFREDLL HHHHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH RPIPALLTRLAELIQARNRFTPVQVGLFRIEVWDQDEAVYREALLNALTHRDYTLRDAVH HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHEE VHHYPDRLEIMNPGGLPGGITPGNILRHQPKRRNPLLAEVLARLGLVERAGVGVDKMYQL EECCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCHHHCCCCHHHHHHH MLRHGKEPPEYTTYPDAVTLTLHSPGFDAEFVRFVARKQEEMQTLSLDMLIVLSLLAREG HHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EATRAGLARALQLPEDRTPRLLRSMEEHRLITRSGVGRGIAYILSEEVQRALGREPKRPV CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC PPPSETASVPSVRQPRFSRSGPDLASGPTPAEVRAVALALAREQGRVRNRDLRDACDLNT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCH QQAWRVLRRLVLEGHLVKRGRGTRDAAYELSSPPAPPAGRSD HHHHHHHHHHHHHCHHHHCCCCCCHHHEECCCCCCCCCCCCC >Mature Secondary Structure TLDSAEAISPLGVLPPPGPSCVHLPLNVTPQELARYAVGLANARGGTVVVGADAPKAQG CCCCCHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC TGERDAGELHPLMVTHAIFELSGGRLTVNVQHWRQPGGAKVLVVFVPQAPYVLAAPDGAV CCCCCCCCCCHHHHHHHHHHCCCCEEEEEEHHHCCCCCCEEEEEEECCCCEEEECCCCEE LAWDGSHLVPVTPAQSEPAPQPDYTAVVPPDASLADLDPHEVARLRGLGQKGGLSHLPDL EEECCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCH DFLRELGLLVPSGGALRPTLAGILLAGTPAALKAHVPQAEVCFYHHQTPDVEFQFREDLL HHHHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH RPIPALLTRLAELIQARNRFTPVQVGLFRIEVWDQDEAVYREALLNALTHRDYTLRDAVH HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHEE VHHYPDRLEIMNPGGLPGGITPGNILRHQPKRRNPLLAEVLARLGLVERAGVGVDKMYQL EECCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCHHHCCCCHHHHHHH MLRHGKEPPEYTTYPDAVTLTLHSPGFDAEFVRFVARKQEEMQTLSLDMLIVLSLLAREG HHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EATRAGLARALQLPEDRTPRLLRSMEEHRLITRSGVGRGIAYILSEEVQRALGREPKRPV CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC PPPSETASVPSVRQPRFSRSGPDLASGPTPAEVRAVALALAREQGRVRNRDLRDACDLNT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCH QQAWRVLRRLVLEGHLVKRGRGTRDAAYELSSPPAPPAGRSD HHHHHHHHHHHHHCHHHHCCCCCCHHHEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9603897 [H]