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The map label for this gene is deoB [H]

Identifier: 94984693

GI number: 94984693

Start: 623739

End: 624917

Strand: Reverse

Name: deoB [H]

Synonym: Dgeo_0586

Alternate gene names: 94984693

Gene position: 624917-623739 (Counterclockwise)

Preceding gene: 94984696

Following gene: 94984692

Centisome position: 25.33

GC content: 66.92

Gene sequence:

>1179_bases
ATGCTCTTGACCATCATCGTACTGGATTCCGTCGGGATGGGGGCGCTGCCCGACGCCGCCAAGTTCGGGGACGCGGGCGC
CCACACCCTCAACCACACGCTGGAAGCTGCCCCGGTCCTGCTGCCCAACCTGGCCCGCCTGGGCCTGAGCCGGGTGCCCA
CCGTTCACACCTCGCCCAAGACGGTTCCGGCGGGGGACGTGCAGGGCGCGTTTGGCCGGATGCGCGAGGTCAGTCCGGGC
AAAGACACCTCGACCGGACACTGGGAATTCATGGGCGTGCAACTGGAACATCCCTTCCAGGTCTTCCCTGAGGGCTTCCC
ACCTGCCGTGATGGACCGTTTCGATGCTGCGACCGGACGCGGGCACCTCTGCAACAAGCCCTACAGCGGCACGGACGTGA
TCCGCGACTACGGCGAAGAACACCTGCGAACCGGGTTTCCCATCGTCTACACCAGCGCCGACAGCGTGTTCCAGATCGCC
GCCCACGAGGACGTGGTGCCGCTGGAAACACTGTACGAGTGGTGCCAGGCAGCCCGCGAGATCCTGCAGGGCGAGTACGC
GGTGGCGCGCGTGATCGCCCGGCCTTTCCGGGGTGAATACCCCTTCGAGCGGGCCAACGAACACCGCAAGGACTTCTCGC
TGGTGCCGCCCCACAACGTCCTGGACGCGCTGAGGGAGAAGGGCCGCGCGGTGGTCGGCATCGGCAAGATTCCTGACATC
TACGCGCACCGGGGCTTTTCCGAGGAGATTCACACCGACAACAATGCGGACGGCATTCAGAAGACCATCACACGGATGCG
GCAGGCAGCAGCACAAGGCGAAGATGGCCTGATCTTTACCAACCTGGTGGACTTCGACGCCAAATACGGCCACCGCCGTG
ACCCGCAGGGCTACAGCCAGGCCCTCGCGGCCTTCGACGCGGCGCTGCCGGAGCTGATCGCCGCGGTGCCAGAAGGCGGC
GCGCTGCTGGTGATCAGTGATCACGGCAATGATCCCACCTGGCACGGCACCGACCACACCCGCGAGTACGGCTTGCTGCT
GGCCTTTCGTCCGGGCCTCACGGGCGCGGTGGACCTGGGCGAGCGCGCCACGTTCGCGGACGTGGGCGCGACCGTCGCCG
AGGCGCTGCAGGCCGAGTGGCAGGGCCCGGGTGAGAGTTTCTGGACGCAGCTGACGTGA

Upstream 100 bases:

>100_bases
CTCTGGGGGCAGGGGTGAGAGAGGCGACGAAGAGAAGTGGGCTTTGACGGTTGGCCCTTCAGACAGGCGCTCAGCGCCTC
AGCCGCCTTACACTACCTCC

Downstream 100 bases:

>100_bases
ACGGTGCTGAAGTGAATGGGGTGGCTCTGCCGCGCCCCCCCAGCGGTCTGGACTTTCGCGCCCAGCCCGAAGCGTTCACC
CTCACCCTCACCCTCGGTGG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MLLTIIVLDSVGMGALPDAAKFGDAGAHTLNHTLEAAPVLLPNLARLGLSRVPTVHTSPKTVPAGDVQGAFGRMREVSPG
KDTSTGHWEFMGVQLEHPFQVFPEGFPPAVMDRFDAATGRGHLCNKPYSGTDVIRDYGEEHLRTGFPIVYTSADSVFQIA
AHEDVVPLETLYEWCQAAREILQGEYAVARVIARPFRGEYPFERANEHRKDFSLVPPHNVLDALREKGRAVVGIGKIPDI
YAHRGFSEEIHTDNNADGIQKTITRMRQAAAQGEDGLIFTNLVDFDAKYGHRRDPQGYSQALAAFDAALPELIAAVPEGG
ALLVISDHGNDPTWHGTDHTREYGLLLAFRPGLTGAVDLGERATFADVGATVAEALQAEWQGPGESFWTQLT

Sequences:

>Translated_392_residues
MLLTIIVLDSVGMGALPDAAKFGDAGAHTLNHTLEAAPVLLPNLARLGLSRVPTVHTSPKTVPAGDVQGAFGRMREVSPG
KDTSTGHWEFMGVQLEHPFQVFPEGFPPAVMDRFDAATGRGHLCNKPYSGTDVIRDYGEEHLRTGFPIVYTSADSVFQIA
AHEDVVPLETLYEWCQAAREILQGEYAVARVIARPFRGEYPFERANEHRKDFSLVPPHNVLDALREKGRAVVGIGKIPDI
YAHRGFSEEIHTDNNADGIQKTITRMRQAAAQGEDGLIFTNLVDFDAKYGHRRDPQGYSQALAAFDAALPELIAAVPEGG
ALLVISDHGNDPTWHGTDHTREYGLLLAFRPGLTGAVDLGERATFADVGATVAEALQAEWQGPGESFWTQLT
>Mature_392_residues
MLLTIIVLDSVGMGALPDAAKFGDAGAHTLNHTLEAAPVLLPNLARLGLSRVPTVHTSPKTVPAGDVQGAFGRMREVSPG
KDTSTGHWEFMGVQLEHPFQVFPEGFPPAVMDRFDAATGRGHLCNKPYSGTDVIRDYGEEHLRTGFPIVYTSADSVFQIA
AHEDVVPLETLYEWCQAAREILQGEYAVARVIARPFRGEYPFERANEHRKDFSLVPPHNVLDALREKGRAVVGIGKIPDI
YAHRGFSEEIHTDNNADGIQKTITRMRQAAAQGEDGLIFTNLVDFDAKYGHRRDPQGYSQALAAFDAALPELIAAVPEGG
ALLVISDHGNDPTWHGTDHTREYGLLLAFRPGLTGAVDLGERATFADVGATVAEALQAEWQGPGESFWTQLT

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=395, Percent_Identity=43.7974683544304, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI1789781, Length=425, Percent_Identity=28, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 42653; Mature: 42653

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTIIVLDSVGMGALPDAAKFGDAGAHTLNHTLEAAPVLLPNLARLGLSRVPTVHTSPK
CEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCEECCCCC
TVPAGDVQGAFGRMREVSPGKDTSTGHWEFMGVQLEHPFQVFPEGFPPAVMDRFDAATGR
CCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHCCCCCCCHHHHHHHHCCCCC
GHLCNKPYSGTDVIRDYGEEHLRTGFPIVYTSADSVFQIAAHEDVVPLETLYEWCQAARE
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHH
ILQGEYAVARVIARPFRGEYPFERANEHRKDFSLVPPHNVLDALREKGRAVVGIGKIPDI
HHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCHH
YAHRGFSEEIHTDNNADGIQKTITRMRQAAAQGEDGLIFTNLVDFDAKYGHRRDPQGYSQ
HHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHCCCCCCCCHHHH
ALAAFDAALPELIAAVPEGGALLVISDHGNDPTWHGTDHTREYGLLLAFRPGLTGAVDLG
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCC
ERATFADVGATVAEALQAEWQGPGESFWTQLT
CCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
>Mature Secondary Structure
MLLTIIVLDSVGMGALPDAAKFGDAGAHTLNHTLEAAPVLLPNLARLGLSRVPTVHTSPK
CEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCEECCCCC
TVPAGDVQGAFGRMREVSPGKDTSTGHWEFMGVQLEHPFQVFPEGFPPAVMDRFDAATGR
CCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHCCCCCCCHHHHHHHHCCCCC
GHLCNKPYSGTDVIRDYGEEHLRTGFPIVYTSADSVFQIAAHEDVVPLETLYEWCQAARE
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHH
ILQGEYAVARVIARPFRGEYPFERANEHRKDFSLVPPHNVLDALREKGRAVVGIGKIPDI
HHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCHH
YAHRGFSEEIHTDNNADGIQKTITRMRQAAAQGEDGLIFTNLVDFDAKYGHRRDPQGYSQ
HHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHCCCCCCCCHHHH
ALAAFDAALPELIAAVPEGGALLVISDHGNDPTWHGTDHTREYGLLLAFRPGLTGAVDLG
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCC
ERATFADVGATVAEALQAEWQGPGESFWTQLT
CCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]