| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is yurY [H]
Identifier: 94984581
GI number: 94984581
Start: 488434
End: 489204
Strand: Reverse
Name: yurY [H]
Synonym: Dgeo_0474
Alternate gene names: 94984581
Gene position: 489204-488434 (Counterclockwise)
Preceding gene: 94984585
Following gene: 94984580
Centisome position: 19.83
GC content: 62.26
Gene sequence:
>771_bases ATGACCAACCAGCCTCATCAGCTTGAGATTCGTAACCTCCACGCCTCTGTCGGTGATCAGCCCATTCTCAAGGGCGTGAA CCTCGTCGTGCCGCGCGGCGAACTGCACGCGATCATGGGGCCGAACGGCAACGGCAAGAGCACCCTCGCCAAGGTGATCG TGGGCGATCCCGAATACACGGTGACGGAAGGCGAGGTGCTGGTGGACGGCCAGAACATCCTGGAAATGGAACCCGATGAG CGTGCCCGCCTCGGCGTGTTCTTGGCCTTCCAGTACCCGGTTGAGATTCCCGGCGTGACGATCGCCAACTTCCTGCGCCT CGCGATGCAGGCCCGCAAGCCCGAGGGCGAGGAGGTGAGCTTTACCGAGTTCTACGGCAAGCTGCAAAGCGCCCTCAAGA CGCTGGAGTGGGACGAGAGCATCGTCGAGCGCTACCTCAACGAGGGCTTTTCGGGCGGCGAGAAGAAGCGCAACGAGATC CTCCAGATGCTGATGCTGGAGCCGAACTACATCATTATGGACGAAACCGACTCCGGCCTCGACGTGGACGCGCTCAAGAT CGTCGCCCGGGGTGTGAACTCCCTGCGTGGCCCCAACCTGGGCGGACTCATCATCACCCACTATCAGCGCCTGCTGAACT ACATCGTGCCGGATAAGGTGCACATCATCGTCGATGGCCGCGTCGTGCAGTCGGGCGGCCCCGAACTCGCGCAGAAGCTC GACACGGAAGGCTATGACTGGGTCAAGCAACTCGCCGTGGCGGGTGCCTGA
Upstream 100 bases:
>100_bases TAGCTCGACCAGTGGGTACAATAGCGCGGTAAGTAGGAATCATTCTCAAGAAGGATTCCTGATGCAGAACTCGCCATAAG GCATGCCCTAAGGAGCGCCC
Downstream 100 bases:
>100_bases GCCTCTCGCCTGACCAAGGAGCCTCACCATGACCAACCCCGAAGTTGCCAACATCAACGCCCAGTACGAATACGGCTGGA GCAACCCCGAGCGCTACGCC
Product: FeS assembly ATPase SufC
Products: NA
Alternate protein names: VEG296 [H]
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MTNQPHQLEIRNLHASVGDQPILKGVNLVVPRGELHAIMGPNGNGKSTLAKVIVGDPEYTVTEGEVLVDGQNILEMEPDE RARLGVFLAFQYPVEIPGVTIANFLRLAMQARKPEGEEVSFTEFYGKLQSALKTLEWDESIVERYLNEGFSGGEKKRNEI LQMLMLEPNYIIMDETDSGLDVDALKIVARGVNSLRGPNLGGLIITHYQRLLNYIVPDKVHIIVDGRVVQSGGPELAQKL DTEGYDWVKQLAVAGA
Sequences:
>Translated_256_residues MTNQPHQLEIRNLHASVGDQPILKGVNLVVPRGELHAIMGPNGNGKSTLAKVIVGDPEYTVTEGEVLVDGQNILEMEPDE RARLGVFLAFQYPVEIPGVTIANFLRLAMQARKPEGEEVSFTEFYGKLQSALKTLEWDESIVERYLNEGFSGGEKKRNEI LQMLMLEPNYIIMDETDSGLDVDALKIVARGVNSLRGPNLGGLIITHYQRLLNYIVPDKVHIIVDGRVVQSGGPELAQKL DTEGYDWVKQLAVAGA >Mature_255_residues TNQPHQLEIRNLHASVGDQPILKGVNLVVPRGELHAIMGPNGNGKSTLAKVIVGDPEYTVTEGEVLVDGQNILEMEPDER ARLGVFLAFQYPVEIPGVTIANFLRLAMQARKPEGEEVSFTEFYGKLQSALKTLEWDESIVERYLNEGFSGGEKKRNEIL QMLMLEPNYIIMDETDSGLDVDALKIVARGVNSLRGPNLGGLIITHYQRLLNYIVPDKVHIIVDGRVVQSGGPELAQKLD TEGYDWVKQLAVAGA
Specific function: Unknown
COG id: COG0396
COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=224, Percent_Identity=28.125, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI156105685, Length=220, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9961252, Length=224, Percent_Identity=27.2321428571429, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4505771, Length=224, Percent_Identity=27.2321428571429, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI9961250, Length=243, Percent_Identity=30.0411522633745, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787972, Length=245, Percent_Identity=50.2040816326531, Blast_Score=245, Evalue=2e-66, Organism=Escherichia coli, GI87081709, Length=235, Percent_Identity=23.8297872340426, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787500, Length=216, Percent_Identity=32.8703703703704, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1786698, Length=214, Percent_Identity=29.4392523364486, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787143, Length=233, Percent_Identity=28.3261802575107, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1788761, Length=229, Percent_Identity=24.8908296943231, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1790162, Length=187, Percent_Identity=32.620320855615, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787370, Length=260, Percent_Identity=23.8461538461538, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI87081782, Length=233, Percent_Identity=25.7510729613734, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1790467, Length=229, Percent_Identity=27.0742358078603, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787029, Length=234, Percent_Identity=26.4957264957265, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789672, Length=236, Percent_Identity=26.6949152542373, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787792, Length=225, Percent_Identity=24, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786654, Length=265, Percent_Identity=26.4150943396226, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI87082267, Length=165, Percent_Identity=27.8787878787879, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790525, Length=227, Percent_Identity=30.3964757709251, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789593, Length=227, Percent_Identity=24.6696035242291, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=27.3504273504274, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=26.7281105990783, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787759, Length=236, Percent_Identity=26.6949152542373, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI48994997, Length=217, Percent_Identity=32.7188940092166, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87081791, Length=231, Percent_Identity=25.1082251082251, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788210, Length=199, Percent_Identity=27.1356783919598, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786398, Length=215, Percent_Identity=27.4418604651163, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789032, Length=272, Percent_Identity=24.2647058823529, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71992290, Length=249, Percent_Identity=32.1285140562249, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI212646699, Length=238, Percent_Identity=28.1512605042017, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI193209708, Length=239, Percent_Identity=30.5439330543933, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71996809, Length=228, Percent_Identity=27.6315789473684, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI25146777, Length=220, Percent_Identity=27.7272727272727, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115534520, Length=218, Percent_Identity=28.8990825688073, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193208177, Length=235, Percent_Identity=27.2340425531915, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193211017, Length=228, Percent_Identity=27.1929824561404, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193211015, Length=228, Percent_Identity=27.1929824561404, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17541710, Length=232, Percent_Identity=24.1379310344828, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17565938, Length=231, Percent_Identity=29.004329004329, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17543740, Length=239, Percent_Identity=28.8702928870293, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115535101, Length=240, Percent_Identity=28.3333333333333, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI116007184, Length=235, Percent_Identity=25.1063829787234, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221500365, Length=235, Percent_Identity=25.1063829787234, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI85724864, Length=227, Percent_Identity=29.5154185022026, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24580555, Length=227, Percent_Identity=29.5154185022026, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI85816269, Length=227, Percent_Identity=29.5154185022026, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24580553, Length=227, Percent_Identity=29.5154185022026, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24659289, Length=226, Percent_Identity=27.4336283185841, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010230 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28274; Mature: 28143
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNQPHQLEIRNLHASVGDQPILKGVNLVVPRGELHAIMGPNGNGKSTLAKVIVGDPEYT CCCCCCEEEEEEHHHCCCCCHHHCCCEEEEECCCEEEEECCCCCCHHHEEEEEECCCCEE VTEGEVLVDGQNILEMEPDERARLGVFLAFQYPVEIPGVTIANFLRLAMQARKPEGEEVS EECCEEEECCCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCH FTEFYGKLQSALKTLEWDESIVERYLNEGFSGGEKKRNEILQMLMLEPNYIIMDETDSGL HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC DVDALKIVARGVNSLRGPNLGGLIITHYQRLLNYIVPDKVHIIVDGRVVQSGGPELAQKL CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECCCHHHHHHH DTEGYDWVKQLAVAGA CCCHHHHHHHHHHCCC >Mature Secondary Structure TNQPHQLEIRNLHASVGDQPILKGVNLVVPRGELHAIMGPNGNGKSTLAKVIVGDPEYT CCCCCEEEEEEHHHCCCCCHHHCCCEEEEECCCEEEEECCCCCCHHHEEEEEECCCCEE VTEGEVLVDGQNILEMEPDERARLGVFLAFQYPVEIPGVTIANFLRLAMQARKPEGEEVS EECCEEEECCCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCH FTEFYGKLQSALKTLEWDESIVERYLNEGFSGGEKKRNEILQMLMLEPNYIIMDETDSGL HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC DVDALKIVARGVNSLRGPNLGGLIITHYQRLLNYIVPDKVHIIVDGRVVQSGGPELAQKL CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECCCHHHHHHH DTEGYDWVKQLAVAGA CCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 9298659 [H]