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The map label for this gene is sufB [H]

Identifier: 94984580

GI number: 94984580

Start: 487002

End: 488405

Strand: Reverse

Name: sufB [H]

Synonym: Dgeo_0473

Alternate gene names: 94984580

Gene position: 488405-487002 (Counterclockwise)

Preceding gene: 94984581

Following gene: 94984579

Centisome position: 19.8

GC content: 62.75

Gene sequence:

>1404_bases
ATGACCAACCCCGAAGTTGCCAACATCAACGCCCAGTACGAATACGGCTGGAGCAACCCCGAGCGCTACGCCGTCAAGGC
GCCCAAGGGCCTTTCCCGCGAAGTCGTCGAGATGATCTCCAAGGCCAAGGACGAGCCGCAGTGGATGCTCGACTTCCGCC
TCAAGGCGCTCGACATCTTCCTGTCCAAGCCCATGCCCACCTGGGGCGCGGACCTCTCGGGGCTGAACTTCGACGAGATC
TACTACTACATCAAGCCCGAAGGCTACAACGCCCGTTCCTGGGACGATGTGCCCGAGGACGTGAAGCAGACCTTCGAGCG
CCTGGGCATCCCCGAAGCCGAGCGCAAGGCGCTGGCGGGCGTAGGCGCCCAGTACGAGTCCGAAATGGTGTACCACAACC
TCAAGGAGGAGTGGGAAAAGCTGGGCGTCGTGTTCCTCTCCATCGAGGACGGCCTGAAACAGTACCCGGACCTCTTCCGC
GAGCACTTCGCCACCGTCATCCCGCCGGAGGACAACAAGTTCGCGGCCATCAACTCCGCCGTGTGGTCGGGCGGTTCCTT
TGTGTACGTGCCCAAGGGCGTGAAGGTGGACATTCCCCTTCAGACGTACTTCCGCATCAACGCGGAGTCGAGCGGCCAGT
TCGAGCGCACCCTGATCATTGTGGACGAGGGCGCGCAGGCCCATTACATCGAGGGCTGCACCGCCCCGACCTACGCCAGC
GATTCCTTCCACTCCGGCGTAATCGAGATCATCGTCAAGGAAGGCGCGCGCTTCCGCTACTCCACCATCCAGAACTGGAG
CCACAATGTCTACAACCTCGTGACCCAGCGCGCCGCCGTGTACCGAAACGGCGTGATGGAGTGGGTGGACGGCAACCTCG
GCTCCAAGGTCACGATGAAGTACCCCGCCTGCTACCTCCTCGAAGAGGGCGCGCGCGGCGAGGTGCTCTCCATCGCGATG
GCAGGCCGTGGCCAACACCAGGATGCCGGGGCGAAGATCGTGCACTTCGCGCCGCACACCAGCGGCACCATCGTCTCCAA
GTCGATCTCCAAGGACTCGGGCCGCTCCTCGTACCGGGGCCTCGTCAAGATTTACGAGGGGGCCTATGGCAGCAAGACGA
ATGTCGAGTGTGACGCCCTGCTGCTCGACGAAGAAGCCCGCACCGACACCTACCCCTACATTGAGATCGAAGAGAAGGAC
GCCAGCGTGGGCCACGAGGCGACCGTCTCCAAGATCAACGACGAGCAGATCCTGTACCTCCAGTCGCGCGGTCTCTCTGA
AGACGAGGCGGCGGGCCTGATTGTGCGGGGCTTTATCGAGCCGATCGCCAAGGAACTGCCGCTGGAGTACGCGGTGGAGC
TCAACCGCCTGATCGAACTCGAAATGGAAGGCAGCGTCGGCTAA

Upstream 100 bases:

>100_bases
CCCGAACTCGCGCAGAAGCTCGACACGGAAGGCTATGACTGGGTCAAGCAACTCGCCGTGGCGGGTGCCTGAGCCTCTCG
CCTGACCAAGGAGCCTCACC

Downstream 100 bases:

>100_bases
AGGCCATGCGCAGCGCGGACGCCGCACACTGGGGCGTCCGCGTCCCTCTGGAGGAACCATGACCCAATTCACCGACCAAC
TCGCTCAGTACAGCGGCCCA

Product: FeS assembly protein SufB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MTNPEVANINAQYEYGWSNPERYAVKAPKGLSREVVEMISKAKDEPQWMLDFRLKALDIFLSKPMPTWGADLSGLNFDEI
YYYIKPEGYNARSWDDVPEDVKQTFERLGIPEAERKALAGVGAQYESEMVYHNLKEEWEKLGVVFLSIEDGLKQYPDLFR
EHFATVIPPEDNKFAAINSAVWSGGSFVYVPKGVKVDIPLQTYFRINAESSGQFERTLIIVDEGAQAHYIEGCTAPTYAS
DSFHSGVIEIIVKEGARFRYSTIQNWSHNVYNLVTQRAAVYRNGVMEWVDGNLGSKVTMKYPACYLLEEGARGEVLSIAM
AGRGQHQDAGAKIVHFAPHTSGTIVSKSISKDSGRSSYRGLVKIYEGAYGSKTNVECDALLLDEEARTDTYPYIEIEEKD
ASVGHEATVSKINDEQILYLQSRGLSEDEAAGLIVRGFIEPIAKELPLEYAVELNRLIELEMEGSVG

Sequences:

>Translated_467_residues
MTNPEVANINAQYEYGWSNPERYAVKAPKGLSREVVEMISKAKDEPQWMLDFRLKALDIFLSKPMPTWGADLSGLNFDEI
YYYIKPEGYNARSWDDVPEDVKQTFERLGIPEAERKALAGVGAQYESEMVYHNLKEEWEKLGVVFLSIEDGLKQYPDLFR
EHFATVIPPEDNKFAAINSAVWSGGSFVYVPKGVKVDIPLQTYFRINAESSGQFERTLIIVDEGAQAHYIEGCTAPTYAS
DSFHSGVIEIIVKEGARFRYSTIQNWSHNVYNLVTQRAAVYRNGVMEWVDGNLGSKVTMKYPACYLLEEGARGEVLSIAM
AGRGQHQDAGAKIVHFAPHTSGTIVSKSISKDSGRSSYRGLVKIYEGAYGSKTNVECDALLLDEEARTDTYPYIEIEEKD
ASVGHEATVSKINDEQILYLQSRGLSEDEAAGLIVRGFIEPIAKELPLEYAVELNRLIELEMEGSVG
>Mature_466_residues
TNPEVANINAQYEYGWSNPERYAVKAPKGLSREVVEMISKAKDEPQWMLDFRLKALDIFLSKPMPTWGADLSGLNFDEIY
YYIKPEGYNARSWDDVPEDVKQTFERLGIPEAERKALAGVGAQYESEMVYHNLKEEWEKLGVVFLSIEDGLKQYPDLFRE
HFATVIPPEDNKFAAINSAVWSGGSFVYVPKGVKVDIPLQTYFRINAESSGQFERTLIIVDEGAQAHYIEGCTAPTYASD
SFHSGVIEIIVKEGARFRYSTIQNWSHNVYNLVTQRAAVYRNGVMEWVDGNLGSKVTMKYPACYLLEEGARGEVLSIAMA
GRGQHQDAGAKIVHFAPHTSGTIVSKSISKDSGRSSYRGLVKIYEGAYGSKTNVECDALLLDEEARTDTYPYIEIEEKDA
SVGHEATVSKINDEQILYLQSRGLSEDEAAGLIVRGFIEPIAKELPLEYAVELNRLIELEMEGSVG

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=464, Percent_Identity=40.0862068965517, Blast_Score=356, Evalue=2e-99,
Organism=Escherichia coli, GI1787971, Length=154, Percent_Identity=29.2207792207792, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 52301; Mature: 52170

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNPEVANINAQYEYGWSNPERYAVKAPKGLSREVVEMISKAKDEPQWMLDFRLKALDIF
CCCCCEEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHH
LSKPMPTWGADLSGLNFDEIYYYIKPEGYNARSWDDVPEDVKQTFERLGIPEAERKALAG
HCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
VGAQYESEMVYHNLKEEWEKLGVVFLSIEDGLKQYPDLFREHFATVIPPEDNKFAAINSA
CCCCHHHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHCCEEECCCCCCEEEEEHH
VWSGGSFVYVPKGVKVDIPLQTYFRINAESSGQFERTLIIVDEGAQAHYIEGCTAPTYAS
HCCCCCEEEECCCCEEEECCEEEEEEECCCCCCEEEEEEEEECCCCEEEECCCCCCCCCC
DSFHSGVIEIIVKEGARFRYSTIQNWSHNVYNLVTQRAAVYRNGVMEWVDGNLGSKVTMK
CCCCCCCEEEEECCCCCEEEHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEE
YPACYLLEEGARGEVLSIAMAGRGQHQDAGAKIVHFAPHTSGTIVSKSISKDSGRSSYRG
CCEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHH
LVKIYEGAYGSKTNVECDALLLDEEARTDTYPYIEIEEKDASVGHEATVSKINDEQILYL
HHHEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCEEEEE
QSRGLSEDEAAGLIVRGFIEPIAKELPLEYAVELNRLIELEMEGSVG
ECCCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCC
>Mature Secondary Structure 
TNPEVANINAQYEYGWSNPERYAVKAPKGLSREVVEMISKAKDEPQWMLDFRLKALDIF
CCCCEEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHH
LSKPMPTWGADLSGLNFDEIYYYIKPEGYNARSWDDVPEDVKQTFERLGIPEAERKALAG
HCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
VGAQYESEMVYHNLKEEWEKLGVVFLSIEDGLKQYPDLFREHFATVIPPEDNKFAAINSA
CCCCHHHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHCCEEECCCCCCEEEEEHH
VWSGGSFVYVPKGVKVDIPLQTYFRINAESSGQFERTLIIVDEGAQAHYIEGCTAPTYAS
HCCCCCEEEECCCCEEEECCEEEEEEECCCCCCEEEEEEEEECCCCEEEECCCCCCCCCC
DSFHSGVIEIIVKEGARFRYSTIQNWSHNVYNLVTQRAAVYRNGVMEWVDGNLGSKVTMK
CCCCCCCEEEEECCCCCEEEHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEE
YPACYLLEEGARGEVLSIAMAGRGQHQDAGAKIVHFAPHTSGTIVSKSISKDSGRSSYRG
CCEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHH
LVKIYEGAYGSKTNVECDALLLDEEARTDTYPYIEIEEKDASVGHEATVSKINDEQILYL
HHHEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCEEEEE
QSRGLSEDEAAGLIVRGFIEPIAKELPLEYAVELNRLIELEMEGSVG
ECCCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]