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The map label for this gene is ddrB

Identifier: 94984403

GI number: 94984403

Start: 287099

End: 287635

Strand: Reverse

Name: ddrB

Synonym: Dgeo_0295

Alternate gene names: 94984403

Gene position: 287635-287099 (Counterclockwise)

Preceding gene: 94984405

Following gene: 94984400

Centisome position: 11.66

GC content: 66.29

Gene sequence:

>537_bases
ATGCTGCACATCGAGTTCATCACGGACCTGGGAGCCAAAGTCACGGTGGATGTGGAGAGCGCCGACAAGCTGCTCGACGT
TCAGCGGCAGTATGGCCGGCTGGGATGGACCAGCGGAGAAGTCCCTGTCGGCGGGTACCAGTTCCCGCTGGAGAACGAGC
CTGACTTCGACTGGTCATTGATCGGGGCCAGAAAATGGACCAACCCGGAAGGCGAGGAGATGATCCTGCACCGCGGCCAC
GCCTACCGCCGCCGCGAGCTGGAGGCCGTGGACAGCCGCAAGATGAAGCTTCCCGCCGCTGTCAAGTACTCCAGAGGTGC
CAAAAATACCGACCCCGAGCACGTCCGCGAGAAGGCCGACGGCGAGTTCGAGTACGTCACCCTAGCGATTTTCCGCGGCG
GCAAGCGCCAGGAACGCTATGCCGTGCCCGGCAGCAACCGCCCGCAGGCCGGCGCCCCCGCCCGCTCGGCAGCGACGCGC
GCCCAGGGTGCCCGGCCGGGTGCAGTTGCGGTGCAGGACGAGGAAACGCCGTTCTGA

Upstream 100 bases:

>100_bases
ACCGGGCTGGGCATGTTCGGCGAGTCTAGCAGCGCCCCCCGCCGCAGGTCACACTGCAACCGCCTCCGCCTGTGTTATGT
TATTTACGTAAGGAGGCAGC

Downstream 100 bases:

>100_bases
ACGGGAAAGCGGTGAGTGGTCAGTGGGGAAAACCCCCTCCGCTCACCACTTTCCACTCACCACTTCCTGCGCCTCAATCA
CTCCCCGCACATTGGCCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: DNA damage response protein B

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLHIEFITDLGAKVTVDVESADKLLDVQRQYGRLGWTSGEVPVGGYQFPLENEPDFDWSLIGARKWTNPEGEEMILHRGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKNTDPEHVREKADGEFEYVTLAIFRGGKRQERYAVPGSNRPQAGAPARSAATR
AQGARPGAVAVQDEETPF

Sequences:

>Translated_178_residues
MLHIEFITDLGAKVTVDVESADKLLDVQRQYGRLGWTSGEVPVGGYQFPLENEPDFDWSLIGARKWTNPEGEEMILHRGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKNTDPEHVREKADGEFEYVTLAIFRGGKRQERYAVPGSNRPQAGAPARSAATR
AQGARPGAVAVQDEETPF
>Mature_178_residues
MLHIEFITDLGAKVTVDVESADKLLDVQRQYGRLGWTSGEVPVGGYQFPLENEPDFDWSLIGARKWTNPEGEEMILHRGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKNTDPEHVREKADGEFEYVTLAIFRGGKRQERYAVPGSNRPQAGAPARSAATR
AQGARPGAVAVQDEETPF

Specific function: ssDNA-binding protein that probably contributes to the ionizing radiation resistance of D.geothermalis. Plays a role in DNA repair and genome reconstitution, in a RecA-independent process, and is necessary for recovery from severe genomic fragmentation as

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DDRB_DEIGD (Q1J1N6)

Other databases:

- EMBL:   CP000359
- RefSeq:   YP_603767.1
- PDB:   3KDV
- PDBsum:   3KDV
- GeneID:   4058019
- GenomeReviews:   CP000359_GR
- KEGG:   dge:Dgeo_0295
- HOGENOM:   HBG450080
- OMA:   GHAYRRR
- ProtClustDB:   CLSK880928
- BioCyc:   DGEO319795:DGEO_0295-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19866; Mature: 19866

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHIEFITDLGAKVTVDVESADKLLDVQRQYGRLGWTSGEVPVGGYQFPLENEPDFDWSL
CEEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCEEE
IGARKWTNPEGEEMILHRGHAYRRRELEAVDSRKMKLPAAVKYSRGAKNTDPEHVREKAD
ECCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHCC
GEFEYVTLAIFRGGKRQERYAVPGSNRPQAGAPARSAATRAQGARPGAVAVQDEETPF
CCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MLHIEFITDLGAKVTVDVESADKLLDVQRQYGRLGWTSGEVPVGGYQFPLENEPDFDWSL
CEEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCEEE
IGARKWTNPEGEEMILHRGHAYRRRELEAVDSRKMKLPAAVKYSRGAKNTDPEHVREKAD
ECCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHCC
GEFEYVTLAIFRGGKRQERYAVPGSNRPQAGAPARSAATRAQGARPGAVAVQDEETPF
CCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA