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The map label for this gene is yagI [H]

Identifier: 94984298

GI number: 94984298

Start: 177855

End: 178580

Strand: Reverse

Name: yagI [H]

Synonym: Dgeo_0190

Alternate gene names: 94984298

Gene position: 178580-177855 (Counterclockwise)

Preceding gene: 94984299

Following gene: 94984295

Centisome position: 7.24

GC content: 67.08

Gene sequence:

>726_bases
TTGTCCCTGTATGCTGGACAAGTGCTGTCCTTGCAGAAAGCCGCGAGCATCTTGGGCGCGTTTAGTGCCGAACAGCCCGA
ATGGGGTGTGCGGGCACTGGCGGCCCACCTGAGCGTTCCCCGTGCGACGGCACACGCCTACCTGGCAGGTCTGACCGAGG
CGGGTTTCCTGCGCCGCACGCCTGCGGGAAAATACCGCCTCTCATGGCATATCGCGGAGATGGGCGCGCAACTGACCACG
GCGCTGCCCTGGTTTCAGGATGCCCGCGCGCTGATCACCCGCCTGGCGCTCGAGGTCAAAGCGGTGGCCTTCCTGTGTCT
GCTGGAGGGTGAGGAGGTGGTCTGCGCCATCCGCGAGCGCCACCCCGACGCAGATATCGATCTGCCCCTCGACATCTACC
TGCCCGCCACCGCCACCGCAAGCGGCAAGATCCTCTACGCGCATGCCGACCTGCAGCCGCGTGAATTTGCCGTCTGCACC
CAGAGCAGCATCACCACCCTGGACGAGTGGCGCACCGAGGTCGCGCGGGTGCGGCGCCGCGGCTACGCCTACTCCATCGA
GGAATGGCTTCCGGGGCAGTGTACCCTGGGCGTCCCCTACCGCCACGCTGGACAGACGGTCGCCGCCATCGGCGTGCAGA
TGAGCGCCCGCCGCTATCTGCGCGAAGAACGCAGCATTCGGGAACGCGTCCTCCAGATCGTGCGGGAGGCCGAAGGCCGC
CTCTAG

Upstream 100 bases:

>100_bases
CCGGTTCGCGCTCGAGAGCGCCAGCGCCACCAGGCGTTTCTTGCCGCACAACTGAACCGGCCCAGACCGGGTCACCTGGG
CACGCGGCATACGTGGCCTT

Downstream 100 bases:

>100_bases
TCACCAGACACGCCTGCGCCACGCAGCCCTCGCGGGATAGAGGAGGCACCACAACAAAAAATCCCCGTCTAGGACGGGGC
CTTTTGCTTGGTGGCCAGGG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSLYAGQVLSLQKAASILGAFSAEQPEWGVRALAAHLSVPRATAHAYLAGLTEAGFLRRTPAGKYRLSWHIAEMGAQLTT
ALPWFQDARALITRLALEVKAVAFLCLLEGEEVVCAIRERHPDADIDLPLDIYLPATATASGKILYAHADLQPREFAVCT
QSSITTLDEWRTEVARVRRRGYAYSIEEWLPGQCTLGVPYRHAGQTVAAIGVQMSARRYLREERSIRERVLQIVREAEGR
L

Sequences:

>Translated_241_residues
MSLYAGQVLSLQKAASILGAFSAEQPEWGVRALAAHLSVPRATAHAYLAGLTEAGFLRRTPAGKYRLSWHIAEMGAQLTT
ALPWFQDARALITRLALEVKAVAFLCLLEGEEVVCAIRERHPDADIDLPLDIYLPATATASGKILYAHADLQPREFAVCT
QSSITTLDEWRTEVARVRRRGYAYSIEEWLPGQCTLGVPYRHAGQTVAAIGVQMSARRYLREERSIRERVLQIVREAEGR
L
>Mature_240_residues
SLYAGQVLSLQKAASILGAFSAEQPEWGVRALAAHLSVPRATAHAYLAGLTEAGFLRRTPAGKYRLSWHIAEMGAQLTTA
LPWFQDARALITRLALEVKAVAFLCLLEGEEVVCAIRERHPDADIDLPLDIYLPATATASGKILYAHADLQPREFAVCTQ
SSITTLDEWRTEVARVRRRGYAYSIEEWLPGQCTLGVPYRHAGQTVAAIGVQMSARRYLREERSIRERVLQIVREAEGRL

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=236, Percent_Identity=25.4237288135593, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 26756; Mature: 26625

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLYAGQVLSLQKAASILGAFSAEQPEWGVRALAAHLSVPRATAHAYLAGLTEAGFLRRT
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECC
PAGKYRLSWHIAEMGAQLTTALPWFQDARALITRLALEVKAVAFLCLLEGEEVVCAIRER
CCCCEEEEEEHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEHHC
HPDADIDLPLDIYLPATATASGKILYAHADLQPREFAVCTQSSITTLDEWRTEVARVRRR
CCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC
GYAYSIEEWLPGQCTLGVPYRHAGQTVAAIGVQMSARRYLREERSIRERVLQIVREAEGR
CCEEEHHHCCCCCEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
L
C
>Mature Secondary Structure 
SLYAGQVLSLQKAASILGAFSAEQPEWGVRALAAHLSVPRATAHAYLAGLTEAGFLRRT
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECC
PAGKYRLSWHIAEMGAQLTTALPWFQDARALITRLALEVKAVAFLCLLEGEEVVCAIRER
CCCCEEEEEEHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEHHC
HPDADIDLPLDIYLPATATASGKILYAHADLQPREFAVCTQSSITTLDEWRTEVARVRRR
CCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC
GYAYSIEEWLPGQCTLGVPYRHAGQTVAAIGVQMSARRYLREERSIRERVLQIVREAEGR
CCEEEHHHCCCCCEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]