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The map label for this gene is yvrC [H]

Identifier: 94984134

GI number: 94984134

Start: 24503

End: 25372

Strand: Reverse

Name: yvrC [H]

Synonym: Dgeo_0025

Alternate gene names: 94984134

Gene position: 25372-24503 (Counterclockwise)

Preceding gene: 94984135

Following gene: 94984133

Centisome position: 1.03

GC content: 65.98

Gene sequence:

>870_bases
ATGCATAAGCTCCTGACCCTCACCGCGCTGACCCTCACGCTCTGCGCCACGGCGGGCGCCACCCGTTACCCCCTCACCCT
CACTGACGACCTGGGCCGCCAGGTGACGCTGCGGGCCGAACCCCGCCGCATGGTGAGCATGCTCCCCAGCAACACCGAAA
CGCTCTGTGCCCTGGGCGTCTGCGACCGGTTGGTCGGCGTGGACAACTACAGCGACTTTCCCCAGCAGGTGACCCGCCTG
CCCAAGCTGGGCGGCCTGTACGATCCCAACGTCGAGGCGATCGTCGCCCTCAAGCCCGATCTGGTGGTCGTGAGCAAGTA
CGGCAAGCTGGCGGAGTCGCTCACCCAAGCGGGCCTCACGGTCCTGGCCGTGAACCCCGAAACCTACGATGACGTCTTGA
GCAAGACCCTCACGCTGGGCCGAGTCGTCAACCGCGAGGCGCAGGCCAAAGCCCTCGTCCTCAACATGCAGCGCGACATC
GCACGGGTCGAGATTCTGACCCGGAACGCCGTCCGCAAGCCCACCACCTACCTGGAAATCGACCCCACGCCGTACAGCGT
CGGTCCCAATTCCTTTATCGGCGTGTTGCTCACCAAGGCGGGCGCACGCAACATCATTCCGGCGAGCATGGGTGACTTTC
CCAAGGTCGATCCCGAGTTCATCGTGAAGGCCAACCCGCAGCTCATGCTGGGTCTGGACCTGAAGGCGGCGCGCAGTCGT
CCCGGCTGGCAGAGCATCCAAGCCGTGAAAACCGGGCGGGTGCTGGAGATTCCCCGGGAGCTGAACACCATGCTGGGCCG
CCCTGGCCCGCGGCTGCCGCAAGCACTCCGGGGGCTGGCCCAGCTCATTCACCCGGAGCTCTTCCGGTAA

Upstream 100 bases:

>100_bases
AATGGAGGAACCGCCCGGCCCCGCCCCGTGCTCGGTCCAGGAGGTACGCCTTCCGCCGCCCCACCGGGCGGTGTTTTCCG
TGAGGGACGGAGGAGAATCT

Downstream 100 bases:

>100_bases
GCCATGAACCTTGAGCCGGAGCGGCAAGCACTGGGCTGGCCGGGGCCGCGCCGCTTGGGGCGCACCGCCGCGCTGGTGGT
GCTGCTGCTGGCCGTGATTG

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MHKLLTLTALTLTLCATAGATRYPLTLTDDLGRQVTLRAEPRRMVSMLPSNTETLCALGVCDRLVGVDNYSDFPQQVTRL
PKLGGLYDPNVEAIVALKPDLVVVSKYGKLAESLTQAGLTVLAVNPETYDDVLSKTLTLGRVVNREAQAKALVLNMQRDI
ARVEILTRNAVRKPTTYLEIDPTPYSVGPNSFIGVLLTKAGARNIIPASMGDFPKVDPEFIVKANPQLMLGLDLKAARSR
PGWQSIQAVKTGRVLEIPRELNTMLGRPGPRLPQALRGLAQLIHPELFR

Sequences:

>Translated_289_residues
MHKLLTLTALTLTLCATAGATRYPLTLTDDLGRQVTLRAEPRRMVSMLPSNTETLCALGVCDRLVGVDNYSDFPQQVTRL
PKLGGLYDPNVEAIVALKPDLVVVSKYGKLAESLTQAGLTVLAVNPETYDDVLSKTLTLGRVVNREAQAKALVLNMQRDI
ARVEILTRNAVRKPTTYLEIDPTPYSVGPNSFIGVLLTKAGARNIIPASMGDFPKVDPEFIVKANPQLMLGLDLKAARSR
PGWQSIQAVKTGRVLEIPRELNTMLGRPGPRLPQALRGLAQLIHPELFR
>Mature_289_residues
MHKLLTLTALTLTLCATAGATRYPLTLTDDLGRQVTLRAEPRRMVSMLPSNTETLCALGVCDRLVGVDNYSDFPQQVTRL
PKLGGLYDPNVEAIVALKPDLVVVSKYGKLAESLTQAGLTVLAVNPETYDDVLSKTLTLGRVVNREAQAKALVLNMQRDI
ARVEILTRNAVRKPTTYLEIDPTPYSVGPNSFIGVLLTKAGARNIIPASMGDFPKVDPEFIVKANPQLMLGLDLKAARSR
PGWQSIQAVKTGRVLEIPRELNTMLGRPGPRLPQALRGLAQLIHPELFR

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 31596; Mature: 31596

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKLLTLTALTLTLCATAGATRYPLTLTDDLGRQVTLRAEPRRMVSMLPSNTETLCALGV
CCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCHHHHHHHCCCCCHHHHHHHH
CDRLVGVDNYSDFPQQVTRLPKLGGLYDPNVEAIVALKPDLVVVSKYGKLAESLTQAGLT
HHHHHCCCCCCHHHHHHHHCHHCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHCCEE
VLAVNPETYDDVLSKTLTLGRVVNREAQAKALVLNMQRDIARVEILTRNAVRKPTTYLEI
EEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
DPTPYSVGPNSFIGVLLTKAGARNIIPASMGDFPKVDPEFIVKANPQLMLGLDLKAARSR
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECHHHHCCC
PGWQSIQAVKTGRVLEIPRELNTMLGRPGPRLPQALRGLAQLIHPELFR
CCHHHHHHHHCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHKLLTLTALTLTLCATAGATRYPLTLTDDLGRQVTLRAEPRRMVSMLPSNTETLCALGV
CCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCHHHHHHHCCCCCHHHHHHHH
CDRLVGVDNYSDFPQQVTRLPKLGGLYDPNVEAIVALKPDLVVVSKYGKLAESLTQAGLT
HHHHHCCCCCCHHHHHHHHCHHCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHCCEE
VLAVNPETYDDVLSKTLTLGRVVNREAQAKALVLNMQRDIARVEILTRNAVRKPTTYLEI
EEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
DPTPYSVGPNSFIGVLLTKAGARNIIPASMGDFPKVDPEFIVKANPQLMLGLDLKAARSR
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECHHHHCCC
PGWQSIQAVKTGRVLEIPRELNTMLGRPGPRLPQALRGLAQLIHPELFR
CCHHHHHHHHCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]