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The map label for this gene is yvrB [H]

Identifier: 94984133

GI number: 94984133

Start: 23480

End: 24499

Strand: Reverse

Name: yvrB [H]

Synonym: Dgeo_0024

Alternate gene names: 94984133

Gene position: 24499-23480 (Counterclockwise)

Preceding gene: 94984134

Following gene: 94984132

Centisome position: 0.99

GC content: 71.08

Gene sequence:

>1020_bases
ATGAACCTTGAGCCGGAGCGGCAAGCACTGGGCTGGCCGGGGCCGCGCCGCTTGGGGCGCACCGCCGCGCTGGTGGTGCT
GCTGCTGGCCGTGATTGTGCTGGCGGTGGGCCTGGGCAGCGTGACCATTGCGCCGGGCGAGGTGCTGGGCGCGCTGTGGC
ACGGGGTGAGCGGCGCGGCCCTCAGCGGCAACGACGTGATTGTCTGGCAGATTCGCCTGCCGCGCGTGCTGATGGGCGTG
GTGGTGGGGGCCTGCCTGGCGGTGTGCGGCGGGGCCTTTCAGGGCGTTTTTCGCAATCCGCTCGCCGACCCCTACCTGCT
GGGAGTGGCGAGCGGGGCGGGCCTCGGCGCGACGATCGGCATCGTGGCGGGCTGGCCGCGCGGCAGCATCCCGCTGGCTG
CGCTGCTCATGGCCCTCGCGGCCGTGACCGTCACACTCACGCTCGCGCGGGAAGGCAGGCGTTTTCCTCCGACGCGCCTG
ATTCTGGCCGGCGTGGTGGTCGGAAGCGTGCTGAGCGCCTGTTCCACCTTCCTGATCCTGCGCGGCGAGGACCGAGCACG
CCAGGTGCTCGCCTATACGCTGGGCGACCTGGGCTTCAGCGGATGGCGGGACGTAGGAACGGTGCTGCCCTATGCCGCGG
TCGGGTGCGGCGTGCTGATCCTGCTTGGGCGAGCGCTGGACACGCTGCAACTGGGCGATCTGACGGCCCGCAGCCTGGGT
GTGCCGGTCGAGCGGCTGCGGCTGCTGGTGGTGATCGCGGCGAGCATCGCCACCGCCGCTGCCGTCGCCTACGTGGGCAT
CATCGGCTTCGTAGGCCTCATCGTGCCGCACGTCGTTCGGTTGGCTTGGGGCACAAACCACCGCGTCCTCCTGCCCATCT
CGGCCCTACTCGGCGGCGCACTCCTGGTGCTGGCCGACCTGCTCGCGCGCACCACCCTGCTCTCGCAGGTCGGAGTCGTC
ACAACGCTGCTGGGCGGGCCGTTTTTTCTGTGGCTGCTGCGGCGGGAGGGGCATGACTAG

Upstream 100 bases:

>100_bases
CCGGGAGCTGAACACCATGCTGGGCCGCCCTGGCCCGCGGCTGCCGCAAGCACTCCGGGGGCTGGCCCAGCTCATTCACC
CGGAGCTCTTCCGGTAAGCC

Downstream 100 bases:

>100_bases
GGAGCGTTCAGCGGTCAGCCGTCAGCCGCCGGCAATCGGCACGCTAGAAGCCCATGACCTGCACGTGCGGGCTGGGAAGG
TTCCCGCCGTGCGAGGAGTG

Product: transport system permease protein

Products: ADP; phosphate; cob(I)alamin [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MNLEPERQALGWPGPRRLGRTAALVVLLLAVIVLAVGLGSVTIAPGEVLGALWHGVSGAALSGNDVIVWQIRLPRVLMGV
VVGACLAVCGGAFQGVFRNPLADPYLLGVASGAGLGATIGIVAGWPRGSIPLAALLMALAAVTVTLTLAREGRRFPPTRL
ILAGVVVGSVLSACSTFLILRGEDRARQVLAYTLGDLGFSGWRDVGTVLPYAAVGCGVLILLGRALDTLQLGDLTARSLG
VPVERLRLLVVIAASIATAAAVAYVGIIGFVGLIVPHVVRLAWGTNHRVLLPISALLGGALLVLADLLARTTLLSQVGVV
TTLLGGPFFLWLLRREGHD

Sequences:

>Translated_339_residues
MNLEPERQALGWPGPRRLGRTAALVVLLLAVIVLAVGLGSVTIAPGEVLGALWHGVSGAALSGNDVIVWQIRLPRVLMGV
VVGACLAVCGGAFQGVFRNPLADPYLLGVASGAGLGATIGIVAGWPRGSIPLAALLMALAAVTVTLTLAREGRRFPPTRL
ILAGVVVGSVLSACSTFLILRGEDRARQVLAYTLGDLGFSGWRDVGTVLPYAAVGCGVLILLGRALDTLQLGDLTARSLG
VPVERLRLLVVIAASIATAAAVAYVGIIGFVGLIVPHVVRLAWGTNHRVLLPISALLGGALLVLADLLARTTLLSQVGVV
TTLLGGPFFLWLLRREGHD
>Mature_339_residues
MNLEPERQALGWPGPRRLGRTAALVVLLLAVIVLAVGLGSVTIAPGEVLGALWHGVSGAALSGNDVIVWQIRLPRVLMGV
VVGACLAVCGGAFQGVFRNPLADPYLLGVASGAGLGATIGIVAGWPRGSIPLAALLMALAAVTVTLTLAREGRRFPPTRL
ILAGVVVGSVLSACSTFLILRGEDRARQVLAYTLGDLGFSGWRDVGTVLPYAAVGCGVLILLGRALDTLQLGDLTARSLG
VPVERLRLLVVIAASIATAAAVAYVGIIGFVGLIVPHVVRLAWGTNHRVLLPISALLGGALLVLADLLARTTLLSQVGVV
TTLLGGPFFLWLLRREGHD

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788004, Length=281, Percent_Identity=41.9928825622776, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1790740, Length=278, Percent_Identity=37.410071942446, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790741, Length=280, Percent_Identity=34.6428571428571, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1786805, Length=288, Percent_Identity=34.375, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1786347, Length=332, Percent_Identity=32.8313253012048, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786804, Length=306, Percent_Identity=33.6601307189542, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 35007; Mature: 35007

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLEPERQALGWPGPRRLGRTAALVVLLLAVIVLAVGLGSVTIAPGEVLGALWHGVSGAA
CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCE
LSGNDVIVWQIRLPRVLMGVVVGACLAVCGGAFQGVFRNPLADPYLLGVASGAGLGATIG
ECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCCCEEH
IVAGWPRGSIPLAALLMALAAVTVTLTLAREGRRFPPTRLILAGVVVGSVLSACSTFLIL
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEE
RGEDRARQVLAYTLGDLGFSGWRDVGTVLPYAAVGCGVLILLGRALDTLQLGDLTARSLG
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
VPVERLRLLVVIAASIATAAAVAYVGIIGFVGLIVPHVVRLAWGTNHRVLLPISALLGGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
LLVLADLLARTTLLSQVGVVTTLLGGPFFLWLLRREGHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLEPERQALGWPGPRRLGRTAALVVLLLAVIVLAVGLGSVTIAPGEVLGALWHGVSGAA
CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCE
LSGNDVIVWQIRLPRVLMGVVVGACLAVCGGAFQGVFRNPLADPYLLGVASGAGLGATIG
ECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCCCEEH
IVAGWPRGSIPLAALLMALAAVTVTLTLAREGRRFPPTRLILAGVVVGSVLSACSTFLIL
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEE
RGEDRARQVLAYTLGDLGFSGWRDVGTVLPYAAVGCGVLILLGRALDTLQLGDLTARSLG
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
VPVERLRLLVVIAASIATAAAVAYVGIIGFVGLIVPHVVRLAWGTNHRVLLPISALLGGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
LLVLADLLARTTLLSQVGVVTTLLGGPFFLWLLRREGHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; cob(I)alamin [Periplasm]; H2O [C]

Specific reaction: ATP + cob(I)alamin [Periplasm] + H2O = ADP + phosphate + cob(I)alamin [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]