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The map label for this gene is yibK [C]

Identifier: 94993702

GI number: 94993702

Start: 316983

End: 317567

Strand: Direct

Name: yibK [C]

Synonym: MGAS10750_Spy0306

Alternate gene names: 94993702

Gene position: 316983-317567 (Clockwise)

Preceding gene: 94993701

Following gene: 94993703

Centisome position: 16.36

GC content: 36.75

Gene sequence:

>585_bases
GTGTGGTTTTTTAAATTAAAAAGAGTAAATGAGATTATGACGACAAAAGAACTTATCAACAAAAACGACAAAGTAAAAAA
GGCTCGCAATCATATTGTCCTGTTTCAACCCCAAATTCCACAAAATACTGGTAATATTGCTAGAACATGTGCTGCAACTA
ATGCACCTTTACACATTATTAAACCCATGGGATTTCCTATTGATGACCGCAAAATGAAGCGTGCCGGCTTGGATTACTGG
GACAAGTTAGAACTGCATTTTTATGATCATTTAGAACAGTTTATCAATCAATGTCACGGACAGCTTCACCTGATTAGCAA
GTTTGCAGTTAATAATTATTCTCAAGCTACTTATGCTGATGGCGATTCCCATTATTTCTTGTTTGGACGAGAAGATACAG
GCCTGCCAGAAGATTTTATGCGAGAACATGCTGAAAAAGCACTTCGTATTCCGATGAATGATGAGCATGTACGGAGTTTA
AATGTCTCAAATACGGTTTGTATGGTGATTTATGAAGCCCTTAGACAACAGGGCTTTCAAGGGTTAGAGTTAAAGCATAC
TTACGAACACGATAAACTAAAATAA

Upstream 100 bases:

>100_bases
TAATGGAAAACAAGCATTCGTTGGTTTAAATCAAACCTGTTATGATTTAAGTTAGCGAGTCACCATCAACCACATTGTTT
GCTGAGCATGACTCCGAGCA

Downstream 100 bases:

>100_bases
TGTACTTTTTAAAAGCGTCAGTTTTTGGCAATATGCGTTGTCAGTAGCTGACGCTTTTAAAAATTTAGTCAAAGCTATTG
CTATCTAGGTTTAAATCTGC

Product: 23S rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MWFFKLKRVNEIMTTKELINKNDKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYW
DKLELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPEDFMREHAEKALRIPMNDEHVRSL
NVSNTVCMVIYEALRQQGFQGLELKHTYEHDKLK

Sequences:

>Translated_194_residues
MWFFKLKRVNEIMTTKELINKNDKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYW
DKLELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPEDFMREHAEKALRIPMNDEHVRSL
NVSNTVCMVIYEALRQQGFQGLELKHTYEHDKLK
>Mature_194_residues
MWFFKLKRVNEIMTTKELINKNDKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYW
DKLELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPEDFMREHAEKALRIPMNDEHVRSL
NVSNTVCMVIYEALRQQGFQGLELKHTYEHDKLK

Specific function: Could methylate the ribose at the nucleotide 34 wobble position in tRNA [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=157, Percent_Identity=42.6751592356688, Blast_Score=121, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 22775; Mature: 22775

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFFKLKRVNEIMTTKELINKNDKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHII
CCEEHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCEEEE
KPMGFPIDDRKMKRAGLDYWDKLELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEECC
GDSHYFLFGREDTGLPEDFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQGFQ
CCCEEEEEECCCCCCCHHHHHHHHHHHEECCCCCHHHHCCCCCCHHHHHHHHHHHHCCCC
GLELKHTYEHDKLK
CCCEEECCCCCCCC
>Mature Secondary Structure
MWFFKLKRVNEIMTTKELINKNDKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHII
CCEEHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCEEEE
KPMGFPIDDRKMKRAGLDYWDKLELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEECC
GDSHYFLFGREDTGLPEDFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQGFQ
CCCEEEEEECCCCCCCHHHHHHHHHHHEECCCCCHHHHCCCCCCHHHHHHHHHHHHCCCC
GLELKHTYEHDKLK
CCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA