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The map label for this gene is ybdA [C]

Identifier: 94972108

GI number: 94972108

Start: 401172

End: 402671

Strand: Direct

Name: ybdA [C]

Synonym: Dgeo_2641

Alternate gene names: 94972108

Gene position: 401172-402671 (Clockwise)

Preceding gene: 94972109

Following gene: 94972097

Centisome position: 69.88

GC content: 66.07

Gene sequence:

>1500_bases
GTGAGCGCTTCCAGTGCCGCCCTGTCGCATGTTGACTCGTTCGCCGCGTCCCTCAAAGCACAGCTCGCTTCCCATCGCGC
GGACAGCCTCCGTCGGCCCACCGAGATTCTCTTCGCGATTCTGCAGGTGTGCGCACGGTTGCTTGTCACCTTGGCCGTAA
CCCCGCAAACCACCGCGCAGCTGGGGTCTACACTCCAAAGGTGTTCGCTGTGTCTCGGCCTTCCGGAGGTCAAACCCGTG
TCTGATGCGGCTCTGTCCTCTTCTACCTCGAGCCGTGCGGTGCTGCGCCTCCCCGAATTCCGGGCTATGCTGCTGGCGAC
CGTCTGCAGCACCCTGGCCGGACGCGCCGTGGCGCTCACCGTGGCCTATCAGCTCTATCAGCTCACCAAGAATCCGCTCA
CCCTGGGCATCTTGGGCCTGGTGGAGGCCATCCCAGCGCTGAGTCTTGCGCTGCTCGGGGGCGTGGTAGCCGACCGCAAC
GACCGTCGCCGTATTCTGCTGCTGACCACCAGCGTAGAAGTGATCTGCGCGCTGCTGTTTTTCCTGTATGCGCCGCATGC
CTCAACCCTGGGCTACGCCCCGATTCTGGCCCTGATCTTCCTGCTGGGGATTGCCCGCGGCTTTTCCGACCCAGCACTTC
CCGCCTTTGAGGCCCAGGTTGTGCCACGCGAGCTCTTGCTGCGTGCCTCAGCCTGGCAGTCGAGCGCGTGGCAGGCGGCG
GCCATCCTGGGGCCGGCTCTGGGAGGTGTGCTGTATGCAGCCGTCAGCGCGCGCGGCACTTACCTCGTTGCAGCCGTCCT
GTATGGCTTGGCCCTGGCTTGCCTCGCCTATGTCAGGCCCAAGCCGCGTCCGGCATTCACCCCTGGCGAGCCGGTGTGGC
AGAGCGTGAAGGAGGGCTTGGCCTTTGTGATGCAGCGGCAGGTGCTGGTGGGCAGTATGGCCCTGGACCTGTTCAGCGTG
CTGTTCGGCGGCGCGGTGGCCTTGCTTCCAGTCTTTGCCTCCGACATCCTGCGGGTGGGACCGCAGGGTCTAGGGGTGCT
GGTCGCCGCACCCAGCATTGGGGCCCTGGCCGTGATGCTGGCAGCAACTCACCGCCCCCCAGGACGCGGCGCAGGACGCA
CGCTGCTGCTTGCCGTGGCGGGCTTTGGGATATGTATGGTGGTGTTCGGGCTGTCACGCAACTTCTTCCTCAGTGTGGCG
GTACTGGTTGCAGCAGGTGTGTTCGACGGCATCAGCATGGTGGTGCGCCGAGCAACACTGCGGCTCAAGGCCCCCGACCA
CATGCGCGGGCGGGTCAGCGCGGTCAGCAGCATGTTTATCGGAGCGAGCAACGAGCTGGGCGCCTTTGAGAGTGGCCTGG
CCGCGAGCTGGCTGGGCACCGCGCGCAGCGTGTGGCTGGGCGGGCTGGTCACCCTGCTGGTGGTGGGTGTGACGGCCTAC
CTCGCGCCAGAACTGCGGGCGATGGATCTCACCGACATCGCCAAGGACCGGTCAGGCTGA

Upstream 100 bases:

>100_bases
GACGGGATGTTTGTCTCACAAGAATTTTCTACAGTCGGCGGCTTGAGCAAAAGATCGACCAGAACGCAGCAAAGCTGAGG
ACAGGGCGGCAAAAGGATGC

Downstream 100 bases:

>100_bases
AGGAGCCGTGGGGGTTGATATTCCCCCCAGGCCGCGCCGGTGTGCTCGCTTCGCTCCTCCAGGTCAGAGTCCAGACGGCA
AGCAGGTCTTTCCGTAACCC

Product: major facilitator transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; DrugProton Antiporter; MFS Permease; Siderophore Export Protein; Membrane Transporter; Transporter Facilitator Family; Transmembrane Protein; Permease Of Facilitator Superfamily; Facilitator Superfamily Transporter Permease; MFS Family Transporter; Macrolide-Efflux Protein; Facilitator Superfamily; Facilitator MFS1 Protein; Permease Protein; Facilitator Superfamily Multidrug Resistance Protein; Permease Facilitator Superfamily; Permeases Of Facilitator Superfamily; Integral Membrane Protein MFS Transporter; Enterobactin Exporter EntS; Permease; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Integral Membrane Protein; Membrame Protein; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; DrugH+ Antiporter; Facilitator Family Transporter; Drug Resistance Efflux Protein; Drug Proton Antiporter; Integral Membrane Transporter; Facilitator Superfamily Transporter Transporter

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MSASSAALSHVDSFAASLKAQLASHRADSLRRPTEILFAILQVCARLLVTLAVTPQTTAQLGSTLQRCSLCLGLPEVKPV
SDAALSSSTSSRAVLRLPEFRAMLLATVCSTLAGRAVALTVAYQLYQLTKNPLTLGILGLVEAIPALSLALLGGVVADRN
DRRRILLLTTSVEVICALLFFLYAPHASTLGYAPILALIFLLGIARGFSDPALPAFEAQVVPRELLLRASAWQSSAWQAA
AILGPALGGVLYAAVSARGTYLVAAVLYGLALACLAYVRPKPRPAFTPGEPVWQSVKEGLAFVMQRQVLVGSMALDLFSV
LFGGAVALLPVFASDILRVGPQGLGVLVAAPSIGALAVMLAATHRPPGRGAGRTLLLAVAGFGICMVVFGLSRNFFLSVA
VLVAAGVFDGISMVVRRATLRLKAPDHMRGRVSAVSSMFIGASNELGAFESGLAASWLGTARSVWLGGLVTLLVVGVTAY
LAPELRAMDLTDIAKDRSG

Sequences:

>Translated_499_residues
MSASSAALSHVDSFAASLKAQLASHRADSLRRPTEILFAILQVCARLLVTLAVTPQTTAQLGSTLQRCSLCLGLPEVKPV
SDAALSSSTSSRAVLRLPEFRAMLLATVCSTLAGRAVALTVAYQLYQLTKNPLTLGILGLVEAIPALSLALLGGVVADRN
DRRRILLLTTSVEVICALLFFLYAPHASTLGYAPILALIFLLGIARGFSDPALPAFEAQVVPRELLLRASAWQSSAWQAA
AILGPALGGVLYAAVSARGTYLVAAVLYGLALACLAYVRPKPRPAFTPGEPVWQSVKEGLAFVMQRQVLVGSMALDLFSV
LFGGAVALLPVFASDILRVGPQGLGVLVAAPSIGALAVMLAATHRPPGRGAGRTLLLAVAGFGICMVVFGLSRNFFLSVA
VLVAAGVFDGISMVVRRATLRLKAPDHMRGRVSAVSSMFIGASNELGAFESGLAASWLGTARSVWLGGLVTLLVVGVTAY
LAPELRAMDLTDIAKDRSG
>Mature_498_residues
SASSAALSHVDSFAASLKAQLASHRADSLRRPTEILFAILQVCARLLVTLAVTPQTTAQLGSTLQRCSLCLGLPEVKPVS
DAALSSSTSSRAVLRLPEFRAMLLATVCSTLAGRAVALTVAYQLYQLTKNPLTLGILGLVEAIPALSLALLGGVVADRND
RRRILLLTTSVEVICALLFFLYAPHASTLGYAPILALIFLLGIARGFSDPALPAFEAQVVPRELLLRASAWQSSAWQAAA
ILGPALGGVLYAAVSARGTYLVAAVLYGLALACLAYVRPKPRPAFTPGEPVWQSVKEGLAFVMQRQVLVGSMALDLFSVL
FGGAVALLPVFASDILRVGPQGLGVLVAAPSIGALAVMLAATHRPPGRGAGRTLLLAVAGFGICMVVFGLSRNFFLSVAV
LVAAGVFDGISMVVRRATLRLKAPDHMRGRVSAVSSMFIGASNELGAFESGLAASWLGTARSVWLGGLVTLLVVGVTAYL
APELRAMDLTDIAKDRSG

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52080; Mature: 51949

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASSAALSHVDSFAASLKAQLASHRADSLRRPTEILFAILQVCARLLVTLAVTPQTTAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LGSTLQRCSLCLGLPEVKPVSDAALSSSTSSRAVLRLPEFRAMLLATVCSTLAGRAVALT
HHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHH
VAYQLYQLTKNPLTLGILGLVEAIPALSLALLGGVVADRNDRRRILLLTTSVEVICALLF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHH
FLYAPHASTLGYAPILALIFLLGIARGFSDPALPAFEAQVVPRELLLRASAWQSSAWQAA
HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHCCCCCHHHH
AILGPALGGVLYAAVSARGTYLVAAVLYGLALACLAYVRPKPRPAFTPGEPVWQSVKEGL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
AFVMQRQVLVGSMALDLFSVLFGGAVALLPVFASDILRVGPQGLGVLVAAPSIGALAVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
AATHRPPGRGAGRTLLLAVAGFGICMVVFGLSRNFFLSVAVLVAAGVFDGISMVVRRATL
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLKAPDHMRGRVSAVSSMFIGASNELGAFESGLAASWLGTARSVWLGGLVTLLVVGVTAY
HCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPELRAMDLTDIAKDRSG
HCCCHHHCCHHHHHCCCCC
>Mature Secondary Structure 
SASSAALSHVDSFAASLKAQLASHRADSLRRPTEILFAILQVCARLLVTLAVTPQTTAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LGSTLQRCSLCLGLPEVKPVSDAALSSSTSSRAVLRLPEFRAMLLATVCSTLAGRAVALT
HHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHH
VAYQLYQLTKNPLTLGILGLVEAIPALSLALLGGVVADRNDRRRILLLTTSVEVICALLF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHH
FLYAPHASTLGYAPILALIFLLGIARGFSDPALPAFEAQVVPRELLLRASAWQSSAWQAA
HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHCCCCCHHHH
AILGPALGGVLYAAVSARGTYLVAAVLYGLALACLAYVRPKPRPAFTPGEPVWQSVKEGL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
AFVMQRQVLVGSMALDLFSVLFGGAVALLPVFASDILRVGPQGLGVLVAAPSIGALAVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
AATHRPPGRGAGRTLLLAVAGFGICMVVFGLSRNFFLSVAVLVAAGVFDGISMVVRRATL
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLKAPDHMRGRVSAVSSMFIGASNELGAFESGLAASWLGTARSVWLGGLVTLLVVGVTAY
HCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPELRAMDLTDIAKDRSG
HCCCHHHCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA